miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>51738_ptc-miR396e:pmrd
          Length = 145

 Score =  161 bits (81), Expect = 2e-40
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                       
Query: 20  ggtcatgcttttccacagctttcttgaacttctttgccttgcttaatctgtgtatatata 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggtcatgcttttccacagctttcttgaacttctttgccttgcttaatctgtgtatatata 60

                                
Query: 80  gatcactacatgtacagctcc 100
           |||||||||||||||||||||
Sbjct: 61  gatcactacatgtacagctcc 81



 Score = 75.8 bits (38), Expect = 1e-14
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 127 gcgccatggaagctcaagaaagctgtgggagaacatgg 164
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gcgccatggaagctcaagaaagctgtgggagaacatgg 145




>53179_ptc-miRf11357-akr:pmrd
          Length = 141

 Score =  155 bits (78), Expect = 1e-38
 Identities = 78/78 (100%)
 Strand = Plus / Minus

                                                                       
Query: 23  catgcttttccacagctttcttgaacttctttgccttgcttaatctgtgtatatatagat 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaacttctttgccttgcttaatctgtgtatatatagat 82

                             
Query: 83  cactacatgtacagctcc 100
           ||||||||||||||||||
Sbjct: 81  cactacatgtacagctcc 64



 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 37/37 (100%)
 Strand = Plus / Minus

                                                
Query: 127 gcgccatggaagctcaagaaagctgtgggagaacatg 163
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  gcgccatggaagctcaagaaagctgtgggagaacatg 1




>52080_ptc-miRf10258-akr:pmrd
          Length = 141

 Score =  155 bits (78), Expect = 1e-38
 Identities = 78/78 (100%)
 Strand = Plus / Minus

                                                                       
Query: 23  catgcttttccacagctttcttgaacttctttgccttgcttaatctgtgtatatatagat 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaacttctttgccttgcttaatctgtgtatatatagat 82

                             
Query: 83  cactacatgtacagctcc 100
           ||||||||||||||||||
Sbjct: 81  cactacatgtacagctcc 64



 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 37/37 (100%)
 Strand = Plus / Minus

                                                
Query: 127 gcgccatggaagctcaagaaagctgtgggagaacatg 163
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  gcgccatggaagctcaagaaagctgtgggagaacatg 1




>48579_gma-miR396b:pmrd
          Length = 126

 Score = 83.8 bits (42), Expect = 4e-17
 Identities = 42/42 (100%)
 Strand = Plus / Plus

                                                    
Query: 12 caagtcctggtcatgcttttccacagctttcttgaacttctt 53
          ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3  caagtcctggtcatgcttttccacagctttcttgaacttctt 44



 Score = 69.9 bits (35), Expect = 7e-13
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 135 gaagctcaagaaagctgtgggagaacatggcaattcagg 173
           ||||||||||||||||||||||||| |||||||||||||
Sbjct: 86  gaagctcaagaaagctgtgggagaatatggcaattcagg 124




>51737_ptc-miR396d:pmrd
          Length = 154

 Score = 75.8 bits (38), Expect = 1e-14
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                        
Query: 20 ggtcatgcttttccacagctttcttgaacttctttgccttgcttaa 65
          |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 1  ggtcatgcttttccacagctttcttgaacttccttgccatgcttaa 46



 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 130 ccatggaagctcaagaaagctgtgggagaacatgg 164
           |||||||||||||||||||| ||||||||||||||
Sbjct: 120 ccatggaagctcaagaaagccgtgggagaacatgg 154




>52893_ptc-miRf11071-akr:pmrd
          Length = 148

 Score = 67.9 bits (34), Expect = 3e-12
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                     
Query: 24  atgcttttccacagctttcttgaacttctttgccttgcttaa 65
           |||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 148 atgcttttccacagctttcttgaacttccttgccatgcttaa 107



 Score = 58.0 bits (29), Expect = 3e-09
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 130 ccatggaagctcaagaaagctgtgggagaacat 162
           |||||||||||||||||||| ||||||||||||
Sbjct: 33  ccatggaagctcaagaaagccgtgggagaacat 1




>54869_vvi-miR396b:pmrd
          Length = 108

 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 23 catgcttttccacagctttcttgaacttctt 53
          |||||||||||||||||||||||||||||||
Sbjct: 7  catgcttttccacagctttcttgaacttctt 37



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 23  catgcttttccacagctttcttgaacttc 51
           |||| ||| ||||||||||||||||||||
Sbjct: 104 catggtttcccacagctttcttgaacttc 76




>54868_vvi-miR396a:pmrd
          Length = 116

 Score = 60.0 bits (30), Expect = 6e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 21 gtcatgcttttccacagctttcttgaacttcttt 54
          ||||||||||||||||||||||||||||| ||||
Sbjct: 5  gtcatgcttttccacagctttcttgaactacttt 38



 Score = 58.0 bits (29), Expect = 3e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 135 gaagctcaagaaagctgtgggagaacatggcaa 167
           ||||||||||||||||||||||| |||||||||
Sbjct: 84  gaagctcaagaaagctgtgggaggacatggcaa 116




>48748_mtr-miR396a:pmrd
          Length = 93

 Score = 60.0 bits (30), Expect = 6e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 25 tgcttttccacagctttcttgaacttcttt 54
          ||||||||||||||||||||||||||||||
Sbjct: 1  tgcttttccacagctttcttgaacttcttt 30



 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 135 gaagctcaagaaagctgtgggagaa 159
           |||||||||||||||||||||||||
Sbjct: 67  gaagctcaagaaagctgtgggagaa 91




>48580_gma-miR396c:pmrd
          Length = 117

 Score = 60.0 bits (30), Expect = 6e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 24 atgcttttccacagctttcttgaacttctt 53
          ||||||||||||||||||||||||||||||
Sbjct: 15 atgcttttccacagctttcttgaacttctt 44




>47009_ath-miR396b:pmrd
          Length = 135

 Score = 54.0 bits (27), Expect = 4e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 20 ggtcatgcttttccacagctttcttgaactt 50
          |||||| ||||||||||||||||||||||||
Sbjct: 1  ggtcatacttttccacagctttcttgaactt 31



 Score = 54.0 bits (27), Expect = 4e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 133 tggaagctcaagaaagctgtgggagaacatg 163
           |||||||||||||||||||||||| ||||||
Sbjct: 102 tggaagctcaagaaagctgtgggaaaacatg 132




>54487_sbi-miR396c:pmrd
          Length = 162

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 23 catgcttttccacagctttcttgaacttct 52
          ||||| ||||||||||||||||||||||||
Sbjct: 14 catgcctttccacagctttcttgaacttct 43



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 32  ccacagctttcttgaacttctttg 55
           ||||||||||||||| ||||||||
Sbjct: 141 ccacagctttcttgaccttctttg 118




>51564_pta-miR396:pmrd
          Length = 119

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 21 gtcatgcttttccacagctttcttgaactt 50
          ||||| ||||||||||||||||||||||||
Sbjct: 8  gtcatacttttccacagctttcttgaactt 37



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 23  catgcttttccacagctttcttgaactt 50
           |||||||| |||||| ||||||||||||
Sbjct: 110 catgctttcccacagttttcttgaactt 83




>48947_osa-miR396c:pmrd
          Length = 141

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 23 catgcttttccacagctttcttgaacttct 52
          ||||| ||||||||||||||||||||||||
Sbjct: 4  catgcctttccacagctttcttgaacttct 33




>55078_zma-miR396g:pmrd
          Length = 117

 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 29 tttccacagctttcttgaacttctt 53
          |||||||||||||||||||||||||
Sbjct: 2  tttccacagctttcttgaacttctt 26




>55077_zma-miR396f:pmrd
          Length = 166

 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 29 tttccacagctttcttgaacttctt 53
          |||||||||||||||||||||||||
Sbjct: 2  tttccacagctttcttgaacttctt 26




>52304_ptc-miRf10482-akr:pmrd
          Length = 102

 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 21 gtcatgcttttccacagctttcttgaacttctt 53
          |||||||| |||||| |||||||||||||||||
Sbjct: 1  gtcatgctattccacggctttcttgaacttctt 33



 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 23  catgcttttccacagctttcttgaacttc 51
           |||| ||||||||||||||||||||||||
Sbjct: 100 catgtttttccacagctttcttgaacttc 72



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 134 ggaagctcaagaaagctgtgggagaacatggc 165
           ||||| ||||||||||||||| | ||||||||
Sbjct: 71  ggaagttcaagaaagctgtggaaaaacatggc 102




>51736_ptc-miR396c:pmrd
          Length = 102

 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 23 catgcttttccacagctttcttgaacttc 51
          |||| ||||||||||||||||||||||||
Sbjct: 4  catgtttttccacagctttcttgaacttc 32



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 22  tcatgcttttccacagctttcttgaacttctt 53
           ||||||| |||||| |||||||||||||||||
Sbjct: 102 tcatgctattccacggctttcttgaacttctt 71



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 134 ggaagctcaagaaagctgtgggagaacatggca 166
           ||||| ||||||||||||||| | |||||||||
Sbjct: 33  ggaagttcaagaaagctgtggaaaaacatggca 1




>52339_ptc-miRf10517-akr:pmrd
          Length = 164

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 23 catgcttttccacagctttcttgaactt 50
          ||||||||||||| ||||||||||||||
Sbjct: 1  catgcttttccacggctttcttgaactt 28




>51740_ptc-miR396g:pmrd
          Length = 168

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 23 catgcttttccacagctttcttgaactt 50
          ||||||||||||| ||||||||||||||
Sbjct: 4  catgcttttccacggctttcttgaactt 31




>54584_smo-miR396:pmrd
          Length = 168

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 22 tcatgcttttccacagctttcttgaac 48
          |||||||||||||| ||||||||||||
Sbjct: 3  tcatgcttttccacggctttcttgaac 29



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 32  ccacagctttcttgaacttc 51
           ||||||||||||||||||||
Sbjct: 153 ccacagctttcttgaacttc 134




>48374_bna-miR396a:pmrd
          Length = 117

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 30 ttccacagctttcttgaactt 50
          |||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactt 21




>46888_aqc-miR396b:pmrd
          Length = 89

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 30 ttccacagctttcttgaactt 50
          |||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactt 21




>55083_zma-miR396l:pmrd
          Length = 97

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55082_zma-miR396k:pmrd
          Length = 98

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55081_zma-miR396j:pmrd
          Length = 98

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55080_zma-miR396i:pmrd
          Length = 103

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55079_zma-miR396h:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 4  ttccacagctttcttgaact 23




>55074_zma-miR396c:pmrd
          Length = 104

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 4  ttccacagctttcttgaact 23




>55073_zma-miR396b:pmrd
          Length = 136

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>55072_zma-miR396a:pmrd
          Length = 137

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54871_vvi-miR396d:pmrd
          Length = 120

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>54870_vvi-miR396c:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>54645_sof-miR396:pmrd
          Length = 134

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54486_sbi-miR396b:pmrd
          Length = 128

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54485_sbi-miR396a:pmrd
          Length = 125

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>52079_ptc-miRf10257-akr:pmrd
          Length = 130

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 9  ttccacagctttcttgaact 28




>51735_ptc-miR396b:pmrd
          Length = 132

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>51734_ptc-miR396a:pmrd
          Length = 123

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48946_osa-miR396b:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48945_osa-miR396a:pmrd
          Length = 154

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48680_lja-miR396:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35




>48578_gma-miR396a:pmrd
          Length = 140

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>48508_ghr-miR396c:pmrd
          Length = 115

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>48507_ghr-miR396b:pmrd
          Length = 115

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>48485_gcl-miR396a:pmrd
          Length = 101

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 30  ttccacagctttcttgaact 49
           ||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82




>48110_ath-miRf11010-akr:pmrd
          Length = 165

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37




>47008_ath-miR396a:pmrd
          Length = 151

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>46887_aqc-miR396a:pmrd
          Length = 122

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20