miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>51651_ptc-miR168b:pmrd
          Length = 136

 Score =  270 bits (136), Expect = 3e-73
 Identities = 136/136 (100%)
 Strand = Plus / Plus

                                                                       
Query: 16  ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60

                                                                       
Query: 76  taaacacgattggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgca 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taaacacgattggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgca 120

                           
Query: 136 tcaactgaatcggaga 151
           ||||||||||||||||
Sbjct: 121 tcaactgaatcggaga 136




>54374_pts-miR168a:pmrd
          Length = 118

 Score =  218 bits (110), Expect = 1e-57
 Identities = 116/118 (98%)
 Strand = Plus / Plus

                                                                       
Query: 26  tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggctaaacacgat 85
           |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 1   tcgcttggtgcaggtcgggaactgattctgcgatttcattgccagatggctaaacacgat 60

                                                                     
Query: 86  tggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgcatcaactga 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgcatcaactga 118




>54366_ptr-miR168:pmrd
          Length = 118

 Score =  218 bits (110), Expect = 1e-57
 Identities = 116/118 (98%)
 Strand = Plus / Plus

                                                                       
Query: 26  tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggctaaacacgat 85
           |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 1   tcgcttggtgcaggtcgggaactgattctgcgatttcattgccagatggctaaacacgat 60

                                                                     
Query: 86  tggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgcatcaactga 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgcatcaactga 118




>51650_ptc-miR168a:pmrd
          Length = 160

 Score =  113 bits (57), Expect = 4e-26
 Identities = 60/61 (98%)
 Strand = Plus / Plus

                                                                      
Query: 16 ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 75
          ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60

           
Query: 76 t 76
          |
Sbjct: 61 t 61



 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 116 gaattggatcccgccttgcatcaactgaatcggag 150
           |||||||||||||||||||||||||||||||||||
Sbjct: 125 gaattggatcccgccttgcatcaactgaatcggag 159




>54375_pts-miR168b:pmrd
          Length = 140

 Score = 93.7 bits (47), Expect = 4e-20
 Identities = 50/51 (98%)
 Strand = Plus / Plus

                                                             
Query: 26 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggct 76
          ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1  tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagctggct 51



 Score = 56.0 bits (28), Expect = 9e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 116 gaattggatcccgccttgcatcaactga 143
           ||||||||||||||||||||||||||||
Sbjct: 113 gaattggatcccgccttgcatcaactga 140




>54388_rco-miR168:pmrd
          Length = 156

 Score = 89.7 bits (45), Expect = 6e-19
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                       
Query: 8  ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 52
          |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 45



 Score = 81.8 bits (41), Expect = 2e-16
 Identities = 50/53 (94%)
 Strand = Plus / Plus

                                                                
Query: 110 gaaagagaattggatcccgccttgcatcaactgaatcggagaccgcggtgaag 162
           ||||| |||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 104 gaaagtgaattggatcccgccttgcatcaactgaatcgaagaccggggtgaag 156




>48560_gma-miR168:pmrd
          Length = 125

 Score = 83.8 bits (42), Expect = 4e-17
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                         
Query: 116 gaattggatcccgccttgcatcaactgaatcggagaccgcggtgaa 161
           ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 79  gaattggatcccgccttgcatcaactgaatcggaggccgcggtgaa 124



 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 14 gcggtctctaattcgcttggtgcaggtcgggaac 47
          ||||||||||||||||||||||||||||||||||
Sbjct: 7  gcggtctctaattcgcttggtgcaggtcgggaac 40




>46958_ath-miR168b:pmrd
          Length = 124

 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                       
Query: 8  ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 52
          ||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 1  ttaccggcggtctcggattcgcttggtgcaggtcgggaactgatt 45



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 124 tcccgccttgcatcaactgaatcggagaccgcggtga 160
           ||||| |||| |||||||||||||||| ||| |||||
Sbjct: 88  tcccgtcttgtatcaactgaatcggagtccgaggtga 124




>54802_vvi-miR168:pmrd
          Length = 132

 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 16 ggtctctaattcgcttggtgcaggtcgggaac 47
          ||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaac 32



 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 122 gatcccgccttgcatcaactgaatcggagac 152
           |||||||||||||||||||||||||||||||
Sbjct: 99  gatcccgccttgcatcaactgaatcggagac 129




>47339_ath-miRf10239-akr:pmrd
          Length = 129

 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 118 attggatcccgccttgcatcaactgaatcgga 149
           ||||||||||||||||||||||||||||||||
Sbjct: 91  attggatcccgccttgcatcaactgaatcgga 122



 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 24 attcgcttggtgcaggtcgggaactgattcggc 56
          ||||||||||||||||||||||||  |||||||
Sbjct: 11 attcgcttggtgcaggtcgggaaccaattcggc 43




>46957_ath-miR168a:pmrd
          Length = 138

 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 118 attggatcccgccttgcatcaactgaatcgga 149
           ||||||||||||||||||||||||||||||||
Sbjct: 96  attggatcccgccttgcatcaactgaatcgga 127



 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 24 attcgcttggtgcaggtcgggaactgattcggc 56
          ||||||||||||||||||||||||  |||||||
Sbjct: 16 attcgcttggtgcaggtcgggaaccaattcggc 48




>48349_bna-miR168:pmrd
          Length = 133

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                   
Query: 12 cggcggtctctaattcgcttggtgcaggtcgggaactgatt 52
          |||||| |||| | |||||||||||||||||||||||||||
Sbjct: 4  cggcggcctctgactcgcttggtgcaggtcgggaactgatt 44




>55000_zma-miR168b:pmrd
          Length = 104

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 121 ggatcccgccttgcatcaactgaatcggag 150
           ||||||||||||||||||| ||||||||||
Sbjct: 63  ggatcccgccttgcatcaagtgaatcggag 92




>46959_ath-miR168m:pmrd
          Length = 104

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 118 attggatcccgccttgcatcaactga 143
           ||||||||||||||||||||||||||
Sbjct: 79  attggatcccgccttgcatcaactga 104



 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 26 tcgcttggtgcaggtcgggaactgattcggc 56
          ||||||||||||||||||||||  |||||||
Sbjct: 1  tcgcttggtgcaggtcgggaaccaattcggc 31




>54546_sly-miR168:pmrd
          Length = 145

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 26 tcgcttggtgcaggtcgggaactgattcggcg 57
          |||||||||||||||||||| || ||||||||
Sbjct: 1  tcgcttggtgcaggtcgggacctcattcggcg 32




>48649_hte-miR168:pmrd
          Length = 140

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 26 tcgcttggtgcaggtcgggaactg 49
          ||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactg 24




>54999_zma-miR168a:pmrd
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 121 ggatcccgccttgcatcaactgaatcggag 150
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92




>54637_sof-miR168b:pmrd
          Length = 103

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 121 ggatcccgccttgcatcaactgaatcggag 150
           ||||||||||||||| ||| ||||||||||
Sbjct: 62  ggatcccgccttgcaccaagtgaatcggag 91




>54636_sof-miR168a:pmrd
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 121 ggatcccgccttgcatcaactgaatcggag 150
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92




>48873_osa-miR168a:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 121 ggatcccgccttgcatcaactgaatcggag 150
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>48872_osa-miR168a:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 121 ggatcccgccttgcatcaactgaatcggag 150
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>48871_osa-miR168a:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 121 ggatcccgccttgcatcaactgaatcggag 150
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>54665_stu-miR168:pmrd
          Length = 133

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 119 ttggatcccgccttgcatcaactga 143
           |||| ||||||||||||||||||||
Sbjct: 109 ttgggtcccgccttgcatcaactga 133



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 26 tcgcttggtgcaggtcggga 45
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20