miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>51762_ptc-miR408:pmrd
          Length = 105

 Score =  200 bits (101), Expect = 3e-52
 Identities = 104/105 (99%)
 Strand = Plus / Plus

                                                                       
Query: 37  agagacagatgaagacggggaacaggcagagcatggatggagctactaacagaagtacat 96
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1   agagacagatgaagacggggaacaggcagagcatggatggagctactaacagaagtactt 60

                                                        
Query: 97  gttttggctctacccatgcactgcctcttccctggcttgtggctc 141
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gttttggctctacccatgcactgcctcttccctggcttgtggctc 105




>53677_ptc-miRf11855-akr:pmrd
          Length = 79

 Score =  149 bits (75), Expect = 8e-37
 Identities = 78/79 (98%)
 Strand = Plus / Plus

                                                                       
Query: 52  cggggaacaggcagagcatggatggagctactaacagaagtacatgttttggctctaccc 111
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1   cggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctaccc 60

                              
Query: 112 atgcactgcctcttccctg 130
           |||||||||||||||||||
Sbjct: 61  atgcactgcctcttccctg 79




>54389_rco-miR408:pmrd
          Length = 129

 Score =  113 bits (57), Expect = 5e-26
 Identities = 106/120 (88%), Gaps = 3/120 (2%)
 Strand = Plus / Plus

                                                                       
Query: 32  cagaaagagacagatgaagacggggaacaggcagagcatggatggagctactaacagaag 91
           |||||| |||||||  ||||| |||||||||||| |||||||||| ||||||||||||| 
Sbjct: 9   cagaaacagacagacaaagactgggaacaggcagtgcatggatggggctactaacagaa- 67

                                                                       
Query: 92  taca--tgttttggctctacccatgcactgcctcttccctggcttgtggctcttcttttt 149
            |||  |||||||||||||||| ||||||||||||||||||||||  || ||||||||||
Sbjct: 68  aacatctgttttggctctacccctgcactgcctcttccctggcttccggttcttcttttt 127




>48428_cpt-miR408:pmrd
          Length = 100

 Score = 79.8 bits (40), Expect = 7e-16
 Identities = 77/87 (88%), Gaps = 3/87 (3%)
 Strand = Plus / Plus

                                                                       
Query: 48  aagacggggaacaggcagagcatggatggagctactaacagaagtac-atgttttggctc 106
           |||||||||||||||||||||||||||||| | | ||||||  || |  |||||||||||
Sbjct: 7   aagacggggaacaggcagagcatggatggaaccattaacag--gttctctgttttggctc 64

                                      
Query: 107 tacccatgcactgcctcttccctggct 133
             |||||||||||||||||||||||||
Sbjct: 65  ctcccatgcactgcctcttccctggct 91




>54892_vvi-miR408:pmrd
          Length = 107

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 96  tgttttggctctacccatgcactgcctcttccctggct 133
           |||||| |||||||||||||||||||||||||||||||
Sbjct: 61  tgtttttgctctacccatgcactgcctcttccctggct 98




>48142_ath-miRf11042-akr:pmrd
          Length = 99

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                 
Query: 96  tgttttggctctacccatgcactgcctcttccctggct 133
           ||||||| ||||||||||||||||||||||||||||||
Sbjct: 42  tgttttgtctctacccatgcactgcctcttccctggct 5




>47031_ath-miR408:pmrd
          Length = 218

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 96  tgttttggctctacccatgcactgcctcttccctggct 133
           ||||||| ||||||||||||||||||||||||||||||
Sbjct: 104 tgttttgtctctacccatgcactgcctcttccctggct 141




>51347_ppe-miR408:pmrd
          Length = 105

 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 76/90 (84%), Gaps = 4/90 (4%)
 Strand = Plus / Plus

                                                                       
Query: 48  aagacggggaacaggcagagcatggatggagctactaacagaagtaca----tgttttgg 103
           ||||| ||||||||| ||||||||||||||| | | |||||||  | |    |||| |||
Sbjct: 7   aagacagggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtgg 66

                                         
Query: 104 ctctacccatgcactgcctcttccctggct 133
           |||||| |||||||||||||||||||||||
Sbjct: 67  ctctactcatgcactgcctcttccctggct 96




>51397_ppt-miR408b:pmrd
          Length = 144

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 111 catgcactgcctcttccctggctt 134
           ||||||||||||||||||||||||
Sbjct: 92  catgcactgcctcttccctggctt 115




>46892_aqc-miR408:pmrd
          Length = 87

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 110 ccatgcactgcctcttccctggct 133
           ||||||||||||||||||||||||
Sbjct: 24  ccatgcactgcctcttccctggct 1




>54649_sof-miR408d:pmrd
          Length = 215

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 108 acccatgcactgcctcttccctggct 133
           |||| |||||||||||||||||||||
Sbjct: 172 acccctgcactgcctcttccctggct 197




>54585_smo-miR408:pmrd
          Length = 109

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 112 atgcactgcctcttccctggct 133
           ||||||||||||||||||||||
Sbjct: 76  atgcactgcctcttccctggct 97




>51566_pta-miR408:pmrd
          Length = 86

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 112 atgcactgcctcttccctggct 133
           ||||||||||||||||||||||
Sbjct: 64  atgcactgcctcttccctggct 85




>48317_bdi-miR408:pmrd
          Length = 133

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 110 ccatgcactgcctcttccctgg 131
           ||||||||||||||||||||||
Sbjct: 67  ccatgcactgcctcttccctgg 88




>55104_zma-miR408:pmrd
          Length = 191

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 113 tgcactgcctcttccctggct 133
           |||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggct 173




>54690_tae-miR408:pmrd
          Length = 187

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 113 tgcactgcctcttccctggct 133
           |||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggct 157




>54648_sof-miR408c:pmrd
          Length = 286

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 113 tgcactgcctcttccctggct 133
           |||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggct 268




>54647_sof-miR408b:pmrd
          Length = 286

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 113 tgcactgcctcttccctggct 133
           |||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggct 268




>54646_sof-miR408a:pmrd
          Length = 283

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 113 tgcactgcctcttccctggct 133
           |||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggct 265




>54499_sbi-miR408:pmrd
          Length = 205

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 113 tgcactgcctcttccctggct 133
           |||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205




>48975_osa-miR408:pmrd
          Length = 213

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 113 tgcactgcctcttccctggct 133
           |||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggct 174