miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q9LW29|AFB2_ARATH Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis
thaliana GN=AFB2 PE=1 SV=1
Length = 575
Score = 76.6 bits (187), Expect = 4e-14
Identities = 33/40 (82%), Positives = 37/40 (92%)
Frame = -2
Query: 120 LNGCKRIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSC 1
LNGCK+++KLEIRD PFGDTALL D+ KYETMRSLWMSSC
Sbjct: 472 LNGCKKMKKLEIRDSPFGDTALLADVSKYETMRSLWMSSC 511
>sp|Q9LPW7|AFB3_ARATH Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis
thaliana GN=AFB3 PE=1 SV=1
Length = 577
Score = 75.1 bits (183), Expect = 1e-13
Identities = 32/40 (80%), Positives = 37/40 (92%)
Frame = -2
Query: 120 LNGCKRIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSC 1
LNGCK++RKLEIRD PFG+ ALL D+G+YETMRSLWMSSC
Sbjct: 474 LNGCKKMRKLEIRDSPFGNAALLADVGRYETMRSLWMSSC 513
>sp|Q7XVM8|TIR1B_ORYSJ Transport inhibitor response 1-like protein
Os04g0395600 OS=Oryza sativa subsp. japonica
GN=Os04g0395600 PE=2 SV=1
Length = 575
Score = 69.7 bits (169), Expect = 5e-12
Identities = 30/40 (75%), Positives = 34/40 (85%)
Frame = -2
Query: 120 LNGCKRIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSC 1
+NGCK +RKLEIRD PFGD ALL + +YETMRSLWMSSC
Sbjct: 472 MNGCKNLRKLEIRDSPFGDAALLGNFARYETMRSLWMSSC 511
>sp|Q9ZR12|GRH1_ARATH GRR1-like protein 1 OS=Arabidopsis thaliana
GN=GRH1 PE=1 SV=1
Length = 585
Score = 68.6 bits (166), Expect = 1e-11
Identities = 30/40 (75%), Positives = 34/40 (85%)
Frame = -2
Query: 120 LNGCKRIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSC 1
L+GC+ ++KLEIRDCPFGDTALL K ETMRSLWMSSC
Sbjct: 473 LSGCESLKKLEIRDCPFGDTALLEHAAKLETMRSLWMSSC 512
>sp|Q570C0|TIR1_ARATH Protein TRANSPORT INHIBITOR RESPONSE 1
OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2
Length = 594
Score = 67.8 bits (164), Expect = 2e-11
Identities = 30/40 (75%), Positives = 33/40 (82%)
Frame = -2
Query: 120 LNGCKRIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSC 1
L+GC +RKLEIRDCPFGD ALL + K ETMRSLWMSSC
Sbjct: 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516
>sp|Q0DKP3|TIR1A_ORYSJ Transport inhibitor response 1-like protein
Os05g0150500 OS=Oryza sativa subsp. japonica
GN=Os05g0150500 PE=2 SV=2
Length = 587
Score = 67.0 bits (162), Expect = 4e-11
Identities = 29/40 (72%), Positives = 33/40 (82%)
Frame = -2
Query: 120 LNGCKRIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSC 1
L+GCK ++KLEIRDCPFGD LL + K ETMRSLWMSSC
Sbjct: 485 LSGCKSLKKLEIRDCPFGDKPLLANAAKLETMRSLWMSSC 524
>sp|Q2R3K5|TIRC_ORYSJ Transport inhibitor response 1-like protein
Os11g0515500 OS=Oryza sativa subsp. japonica
GN=Os11g0515500 PE=2 SV=1
Length = 568
Score = 65.9 bits (159), Expect = 8e-11
Identities = 28/40 (70%), Positives = 34/40 (85%)
Frame = -2
Query: 120 LNGCKRIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSC 1
LNGCK ++KLEIRD PFGD+ALL + +YE MRSLW+SSC
Sbjct: 466 LNGCKNLKKLEIRDSPFGDSALLAGMHQYEAMRSLWLSSC 505
>sp|Q9LTX2|TIR1L_ARATH Transport inhibitor response 1-like protein
OS=Arabidopsis thaliana GN=At5g49980 PE=1 SV=1
Length = 619
Score = 54.7 bits (130), Expect = 2e-07
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = -2
Query: 120 LNGCKRIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSC 1
L GC R++KLEIRD PFGD AL + + +Y MR +WMS+C
Sbjct: 523 LEGCPRLQKLEIRDSPFGDVALRSGMHRYYNMRFVWMSAC 562
>sp|Q8RWQ8|FBX14_ARATH F-box protein FBX14 OS=Arabidopsis thaliana
GN=FBX14 PE=1 SV=1
Length = 623
Score = 52.8 bits (125), Expect = 7e-07
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = -2
Query: 120 LNGCKRIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSC 1
L GC +++KLEIRD PFGD L + + +Y MR +W+SSC
Sbjct: 523 LEGCPKLQKLEIRDSPFGDVGLRSGMHRYSNMRFVWLSSC 562
