miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|P48534|APX1_PEA L-ascorbate peroxidase, cytosolic OS=Pisum
sativum GN=APX1 PE=1 SV=2
Length = 250
Score = 60.5 bits (145), Expect(2) = 5e-10
Identities = 26/35 (74%), Positives = 33/35 (94%)
Frame = +1
Query: 7 SKTGGPFGTMRFKAELSHGANDGADIAIRLLEPIK 111
+KTGGPFGT++ +AEL+HGAN+G DIA+RLLEPIK
Sbjct: 51 TKTGGPFGTIKHQAELAHGANNGLDIAVRLLEPIK 85
Score = 22.7 bits (47), Expect(2) = 5e-10
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 113 YQLAGVVAVE 142
YQLAGVVAVE
Sbjct: 97 YQLAGVVAVE 106
>sp|Q10N21|APX1_ORYSJ L-ascorbate peroxidase 1, cytosolic OS=Oryza
sativa subsp. japonica GN=APX1 PE=1 SV=1
Length = 250
Score = 60.1 bits (144), Expect(2) = 6e-10
Identities = 28/37 (75%), Positives = 31/37 (83%)
Frame = +1
Query: 1 VCSKTGGPFGTMRFKAELSHGANDGADIAIRLLEPIK 111
V SKTGGPFGTM+ AELSH AN G DIA+R+LEPIK
Sbjct: 49 VSSKTGGPFGTMKTPAELSHAANAGLDIAVRMLEPIK 85
Score = 22.7 bits (47), Expect(2) = 6e-10
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 113 YQLAGVVAVE 142
YQLAGVVAVE
Sbjct: 97 YQLAGVVAVE 106
>sp|A2XFC7|APX1_ORYSI L-ascorbate peroxidase 1, cytosolic OS=Oryza
sativa subsp. indica GN=APX1 PE=2 SV=1
Length = 250
Score = 60.1 bits (144), Expect(2) = 6e-10
Identities = 28/37 (75%), Positives = 31/37 (83%)
Frame = +1
Query: 1 VCSKTGGPFGTMRFKAELSHGANDGADIAIRLLEPIK 111
V SKTGGPFGTM+ AELSH AN G DIA+R+LEPIK
Sbjct: 49 VSSKTGGPFGTMKTPAELSHAANAGLDIAVRMLEPIK 85
Score = 22.7 bits (47), Expect(2) = 6e-10
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 113 YQLAGVVAVE 142
YQLAGVVAVE
Sbjct: 97 YQLAGVVAVE 106
>sp|Q1PER6|APX2_ARATH L-ascorbate peroxidase 2, cytosolic
OS=Arabidopsis thaliana GN=APX2 PE=2 SV=3
Length = 251
Score = 55.5 bits (132), Expect(2) = 1e-08
Identities = 25/37 (67%), Positives = 31/37 (83%)
Frame = +1
Query: 1 VCSKTGGPFGTMRFKAELSHGANDGADIAIRLLEPIK 111
V +KTGGPFGT+R EL+H AN+G DIA+RLL+PIK
Sbjct: 50 VKTKTGGPFGTIRHPQELAHDANNGLDIAVRLLDPIK 86
Score = 22.7 bits (47), Expect(2) = 1e-08
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 113 YQLAGVVAVE 142
YQLAGVVAVE
Sbjct: 98 YQLAGVVAVE 107
>sp|Q05431|APX1_ARATH L-ascorbate peroxidase 1, cytosolic
OS=Arabidopsis thaliana GN=APX1 PE=1 SV=2
Length = 250
Score = 57.0 bits (136), Expect(2) = 2e-08
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = +1
Query: 7 SKTGGPFGTMRFKAELSHGANDGADIAIRLLEPIK 111
S+TGGPFGTMRF AE +HGAN G IA+RLL+PI+
Sbjct: 51 SRTGGPFGTMRFDAEQAHGANSGIHIALRLLDPIR 85
Score = 20.8 bits (42), Expect(2) = 2e-08
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 113 YQLAGVVAVE 142
+QLAGVVAVE
Sbjct: 97 HQLAGVVAVE 106
>sp|Q9FE01|APX2_ORYSJ L-ascorbate peroxidase 2, cytosolic OS=Oryza
sativa subsp. japonica GN=APX2 PE=1 SV=1
Length = 251
Score = 54.3 bits (129), Expect(2) = 3e-08
Identities = 25/37 (67%), Positives = 29/37 (78%)
Frame = +1
Query: 1 VCSKTGGPFGTMRFKAELSHGANDGADIAIRLLEPIK 111
V S+TGGPFGTM+ E SH AN G DIA+RLL+PIK
Sbjct: 50 VSSRTGGPFGTMKNPGEQSHAANAGLDIAVRLLDPIK 86
Score = 22.7 bits (47), Expect(2) = 3e-08
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 113 YQLAGVVAVE 142
YQLAGVVAVE
Sbjct: 98 YQLAGVVAVE 107
>sp|Q0JEQ2|APX3_ORYSJ Probable L-ascorbate peroxidase 3 OS=Oryza
sativa subsp. japonica GN=APX3 PE=2 SV=1
Length = 291
Score = 46.2 bits (108), Expect(2) = 7e-06
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +1
Query: 7 SKTGGPFGTMRFKAELSHGANDGADIAIRLLEPIK 111
+KTGGP G++RF E SH AN G IAI LLEP+K
Sbjct: 50 TKTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMK 84
Score = 22.7 bits (47), Expect(2) = 7e-06
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 113 YQLAGVVAVE 142
YQLAGVVAVE
Sbjct: 96 YQLAGVVAVE 105
>sp|Q01MI9|APX3_ORYSI Probable L-ascorbate peroxidase 3 OS=Oryza
sativa subsp. indica GN=APX3 PE=2 SV=1
Length = 291
Score = 46.2 bits (108), Expect(2) = 7e-06
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +1
Query: 7 SKTGGPFGTMRFKAELSHGANDGADIAIRLLEPIK 111
+KTGGP G++RF E SH AN G IAI LLEP+K
Sbjct: 50 TKTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMK 84
Score = 22.7 bits (47), Expect(2) = 7e-06
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 113 YQLAGVVAVE 142
YQLAGVVAVE
Sbjct: 96 YQLAGVVAVE 105
>sp|Q6ZJJ1|APX4_ORYSJ Probable L-ascorbate peroxidase 4 OS=Oryza
sativa subsp. japonica GN=APX4 PE=2 SV=1
Length = 291
Score = 44.3 bits (103), Expect(2) = 3e-05
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = +1
Query: 1 VCSKTGGPFGTMRFKAELSHGANDGADIAIRLLEPIK 111
V +KTGG G++R++ E +HG+N G IAI LLEPIK
Sbjct: 47 VNTKTGGANGSIRYEEEYTHGSNAGLKIAIDLLEPIK 83
Score = 22.7 bits (47), Expect(2) = 3e-05
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 113 YQLAGVVAVE 142
YQLAGVVAVE
Sbjct: 95 YQLAGVVAVE 104
>sp|Q42564|APX3_ARATH L-ascorbate peroxidase 3, peroxisomal
OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1
Length = 287
Score = 40.4 bits (93), Expect(2) = 3e-04
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +1
Query: 7 SKTGGPFGTMRFKAELSHGANDGADIAIRLLEPIK 111
SKTGGP G++R + E +HGAN G IA+ L E +K
Sbjct: 49 SKTGGPNGSIRNEEEHTHGANSGLKIALDLCEGVK 83
Score = 22.7 bits (47), Expect(2) = 3e-04
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 113 YQLAGVVAVE 142
YQLAGVVAVE
Sbjct: 95 YQLAGVVAVE 104
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q96N38|ZN714_HUMAN Zinc finger protein 714 OS=Homo sapiens
GN=ZNF714 PE=2 SV=1
Length = 555
Score = 71.2 bits (173), Expect = 2e-12
Identities = 34/47 (72%), Positives = 37/47 (78%)
Frame = -1
Query: 141 GVVAHTCNPSTLGG*GRGITRSRVQDPPGQHGETPSLLKIQK*ATCG 1
G+VAH CNP+TL G G I RS VQD PGQHG+TPSLLKIQK A CG
Sbjct: 505 GMVAHACNPNTLRGLGEQIARSGVQDQPGQHGKTPSLLKIQKFAGCG 551
>sp|Q96CB5|CH044_HUMAN Putative uncharacterized protein C8orf44
OS=Homo sapiens GN=C8orf44 PE=2 SV=2
Length = 159
Score = 38.5 bits (88), Expect(2) = 5e-07
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = -3
Query: 82 EVKSSRPAWSAW*NSISTKNTKMSHM 5
EV+SS+PAW W N I TKNTK+S +
Sbjct: 58 EVRSSKPAWPTWRNPIFTKNTKISQV 83
Score = 34.3 bits (77), Expect(2) = 5e-07
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -2
Query: 134 WLTPVIPALWEAEAGGS 84
WL PVIPALWEA+AG S
Sbjct: 40 WLMPVIPALWEAKAGRS 56
>sp|Q05481|ZNF91_HUMAN Zinc finger protein 91 OS=Homo sapiens GN=ZNF91
PE=2 SV=2
Length = 1191
Score = 50.4 bits (119), Expect = 3e-06
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = -2
Query: 131 LTPVIPALWEAEAGGSRGQEFKTRLVSMVKLHLY 30
+TPVIP LWEAEAGGSRGQE +T L + VK LY
Sbjct: 1158 ITPVIPLLWEAEAGGSRGQEMETILANTVKPLLY 1191
>sp|Q99959|PKP2_HUMAN Plakophilin-2 OS=Homo sapiens GN=PKP2 PE=1
SV=2
Length = 881
Score = 50.1 bits (118), Expect = 4e-06
Identities = 23/32 (71%), Positives = 24/32 (75%)
Frame = -1
Query: 141 GVVAHTCNPSTLGG*GRGITRSRVQDPPGQHG 46
G VAH CNPSTLGG G ITRS V+D P QHG
Sbjct: 473 GAVAHACNPSTLGGQGGRITRSGVRDQPDQHG 504
>sp|Q7Z5D8|NANGN_HUMAN NANOG neighbor homeobox OS=Homo sapiens
GN=NANOGNB PE=2 SV=1
Length = 188
Score = 49.3 bits (116), Expect = 7e-06
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = -2
Query: 134 WLTPVIPALWEAEAGGSRGQEFKTRLVS 51
WLTPVIPALWEAEAG SRGQE +T L +
Sbjct: 6 WLTPVIPALWEAEAGRSRGQEIETILAN 33
>sp|Q8N2A0|CX062_HUMAN Putative uncharacterized protein encoded by
NCRNA00269 OS=Homo sapiens GN=NCRNA00269 PE=5 SV=1
Length = 174
Score = 37.7 bits (86), Expect(2) = 9e-06
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +1
Query: 85 DPPASASQSAGITGVSH 135
DPPASASQSAGITGVSH
Sbjct: 145 DPPASASQSAGITGVSH 161
Score = 30.8 bits (68), Expect(2) = 9e-06
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +3
Query: 3 HMWLIFVFLVEMEFHHADQAG 65
H LIFVF VE FHH QAG
Sbjct: 117 HTRLIFVFSVETGFHHVGQAG 137
>sp|Q8WTZ3|YS049_HUMAN Zinc finger protein ENSP00000375192 OS=Homo
sapiens PE=2 SV=1
Length = 238
Score = 46.2 bits (108), Expect = 6e-05
Identities = 24/48 (50%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +3
Query: 3 HMWLIFVFLVEMEFHHADQAG----XXXXXXXXXXXXXPKCWDYRCEP 134
H LIFVFLVE FHH DQAG PKCWDY+ EP
Sbjct: 142 HAQLIFVFLVETGFHHFDQAGFELLTSSDPPALASQSAPKCWDYKHEP 189
>sp|Q9NRJ1|MOST1_HUMAN Protein MOST-1 OS=Homo sapiens GN=C8orf17
PE=1 SV=1
Length = 99
Score = 38.1 bits (87), Expect(2) = 2e-04
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = -2
Query: 134 WLTPVIPALWEAEAGG 87
WLTPVIPALW+AEAGG
Sbjct: 70 WLTPVIPALWKAEAGG 85
Score = 25.8 bits (55), Expect(2) = 2e-04
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -3
Query: 82 EVKSSRPAWSAW 47
E++SSRPAW+ W
Sbjct: 88 ELRSSRPAWTTW 99
>sp|Q86V71|ZN429_HUMAN Zinc finger protein 429 OS=Homo sapiens
GN=ZNF429 PE=1 SV=2
Length = 674
Score = 43.9 bits (102), Expect = 3e-04
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = -1
Query: 141 GVVAHTCNPSTLGG*GRGITRSRVQDPPG 55
GVVAH CNPSTLGG G ITRS +D PG
Sbjct: 646 GVVAHACNPSTLGGRGGRITRSGDRDRPG 674
