miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1
homolog OS=Arabidopsis thaliana GN=BRCA1 PE=2 SV=1
Length = 941
Score = 52.8 bits (125), Expect = 7e-07
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = -2
Query: 108 KVLMAILNGRWVLKLDWIKACMEEKNPVEEQPYEI 4
K +MAIL G+W+L +DWIKACM+ V E+PYEI
Sbjct: 785 KFMMAILEGKWILTIDWIKACMKNTKYVSEEPYEI 819
>sp|Q9QZH2|BARD1_RAT BRCA1-associated RING domain protein 1
OS=Rattus norvegicus GN=Bard1 PE=2 SV=1
Length = 768
Score = 47.4 bits (111), Expect = 3e-05
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = -2
Query: 108 KVLMAILNGRWVLKLDWIKACMEEKNPVEEQPYEI 4
K ++ ILNG WVLK DW+KAC++ + +E+ YE+
Sbjct: 610 KCMLGILNGCWVLKFDWVKACLDSQEREQEEKYEV 644
>sp|O70445|BARD1_MOUSE BRCA1-associated RING domain protein 1 OS=Mus
musculus GN=Bard1 PE=1 SV=1
Length = 765
Score = 45.4 bits (106), Expect = 1e-04
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = -2
Query: 108 KVLMAILNGRWVLKLDWIKACMEEKNPVEEQPYEI 4
K ++ IL+G W+LK DW+KAC++ K +E+ YE+
Sbjct: 607 KCMLGILSGCWILKFDWVKACLDSKVREQEEKYEV 641
>sp|Q99728|BARD1_HUMAN BRCA1-associated RING domain protein 1
OS=Homo sapiens GN=BARD1 PE=1 SV=2
Length = 777
Score = 45.1 bits (105), Expect = 1e-04
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -2
Query: 108 KVLMAILNGRWVLKLDWIKACMEEKNPVEEQPYEI 4
K ++ ILNG W+LK +W+KAC+ K +E+ YEI
Sbjct: 619 KCMLGILNGCWILKFEWVKACLRRKVCEQEEKYEI 653
