miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q9LK57|PP226_ARATH Pentatricopeptide repeat_field-containing protein
At3g13160, mitochondrial OS=Arabidopsis thaliana
GN=At3g13160 PE=1 SV=1
Length = 394
Score = 92.0 bits (227), Expect = 1e-18
Identities = 43/47 (91%), Positives = 44/47 (93%)
Frame = +3
Query: 3 NLYGRAGMFENAQKVFDGMPERNCKRSVLSFNALLNACVNSKKFDLV 143
NLYGR GMFENAQKVFD MPERNCKR+ LSFNALLNACVNSKKFDLV
Sbjct: 114 NLYGRVGMFENAQKVFDEMPERNCKRTALSFNALLNACVNSKKFDLV 160
>sp|Q9LG23|PPR82_ARATH Pentatricopeptide repeat_field-containing protein
At1g55890, mitochondrial OS=Arabidopsis thaliana
GN=At1g55890 PE=1 SV=1
Length = 398
Score = 74.3 bits (181), Expect = 2e-13
Identities = 36/47 (76%), Positives = 42/47 (89%)
Frame = +3
Query: 3 NLYGRAGMFENAQKVFDGMPERNCKRSVLSFNALLNACVNSKKFDLV 143
+LYG+AGMFENAQKVF+ MP R+CKRSVLSFNALL+A SKKFD+V
Sbjct: 117 SLYGKAGMFENAQKVFEEMPNRDCKRSVLSFNALLSAYRLSKKFDVV 163
>sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat_field-containing protein
At3g13150 OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1
Length = 551
Score = 62.8 bits (151), Expect = 6e-10
Identities = 30/44 (68%), Positives = 36/44 (81%)
Frame = +3
Query: 6 LYGRAGMFENAQKVFDGMPERNCKRSVLSFNALLNACVNSKKFD 137
LYG +GM E+A K+FD MPE NC+R+V SFNALL+A VNSKK D
Sbjct: 131 LYGYSGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLD 174
>sp|Q9M065|PP352_ARATH Pentatricopeptide repeat_field-containing protein
At4g36680, mitochondrial OS=Arabidopsis thaliana
GN=At4g36680 PE=1 SV=1
Length = 412
Score = 53.1 bits (126), Expect = 5e-07
Identities = 24/45 (53%), Positives = 32/45 (71%)
Frame = +3
Query: 9 YGRAGMFENAQKVFDGMPERNCKRSVLSFNALLNACVNSKKFDLV 143
YG+A MF +A + F+ M + RS +SFNALLNAC++SK FD V
Sbjct: 112 YGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKV 156
>sp|Q9ZU67|PP162_ARATH Pentatricopeptide repeat_field-containing protein
At2g18520, mitochondrial OS=Arabidopsis thaliana
GN=At2g18520 PE=2 SV=1
Length = 418
Score = 49.3 bits (116), Expect = 7e-06
Identities = 23/45 (51%), Positives = 33/45 (73%)
Frame = +3
Query: 9 YGRAGMFENAQKVFDGMPERNCKRSVLSFNALLNACVNSKKFDLV 143
YGRA MF++A K+F+ M + R+V+SFNALL AC++S F+ V
Sbjct: 112 YGRASMFDHAMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFERV 156
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat_field-containing protein
At5g16420, mitochondrial OS=Arabidopsis thaliana
GN=At5g16420 PE=2 SV=1
Length = 535
Score = 45.8 bits (107), Expect = 8e-05
Identities = 20/45 (44%), Positives = 31/45 (68%)
Frame = +3
Query: 9 YGRAGMFENAQKVFDGMPERNCKRSVLSFNALLNACVNSKKFDLV 143
YG AG +E++ ++F +P+ KRSV S N LLN + +++FDLV
Sbjct: 130 YGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLV 174
