miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|O94553|RPC6_SCHPO Probable DNA-directed RNA polymerase III
subunit rpc6 OS=Schizosaccharomyces pombe (strain ATCC
38366 / 972) GN=rpc6 PE=2 SV=1
Length = 301
Score = 46.6 bits (109), Expect = 5e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = -3
Query: 183 ESTILRLIKNTGDSGILLRDIKRESRIPDNMCTKALKSLSAKNMIKQVVSIKNKGSKIYM 4
E + IKN+G+ GI + + + + ++ + LKSL +KN++K + S+KN KIYM
Sbjct: 87 EQIVYSFIKNSGNEGIWRKTLTLRTNLHVSVVDRCLKSLESKNLVKSIKSVKNPTRKIYM 146
>sp|Q921X6|RPC6_MOUSE DNA-directed RNA polymerase III subunit RPC6
OS=Mus musculus GN=Polr3f PE=1 SV=1
Length = 316
Score = 46.2 bits (108), Expect = 6e-05
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = -3
Query: 183 ESTILRLIKNTGDSGILLRDIKRESRIPDNMCTKALKSLSAKNMIKQVVSIKNKGSKIYM 4
E + ++I++ G+ GI RDI+ +S +P K LK+L +K +IK V S+ K+YM
Sbjct: 92 EKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYM 151
>sp|Q9H1D9|RPC6_HUMAN DNA-directed RNA polymerase III subunit RPC6
OS=Homo sapiens GN=POLR3F PE=1 SV=1
Length = 316
Score = 46.2 bits (108), Expect = 6e-05
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = -3
Query: 183 ESTILRLIKNTGDSGILLRDIKRESRIPDNMCTKALKSLSAKNMIKQVVSIKNKGSKIYM 4
E + ++I++ G+ GI RDI+ +S +P K LK+L +K +IK V S+ K+YM
Sbjct: 92 EKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYM 151
>sp|Q9VD25|RPC6_DROME Probable DNA-directed RNA polymerase III
subunit RPC6 OS=Drosophila melanogaster GN=CG5380 PE=1
SV=1
Length = 293
Score = 46.2 bits (108), Expect = 6e-05
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = -3
Query: 231 KRKRPETQ--LPGPVGDAESTILRLIKNTGDSGILLRDIKRESRIPDNMCTKALKSLSAK 58
+ K PE + LP + E + +++ G+ GI +RDI+ +S + K LK+L K
Sbjct: 62 RAKDPEKKSALPKDADNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKILKNLETK 121
Query: 57 NMIKQVVSIKNKGSKIYM 4
+IK V S+ K+YM
Sbjct: 122 KLIKAVKSVNASKKKVYM 139
>sp|Q2T9S3|RPC6_BOVIN DNA-directed RNA polymerase III subunit RPC6
OS=Bos taurus GN=POLR3F PE=2 SV=1
Length = 316
Score = 46.2 bits (108), Expect = 6e-05
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = -3
Query: 183 ESTILRLIKNTGDSGILLRDIKRESRIPDNMCTKALKSLSAKNMIKQVVSIKNKGSKIYM 4
E + ++I++ G+ GI RDI+ +S +P K LK+L +K +IK V S+ K+YM
Sbjct: 92 EKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYM 151
