miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|A6NKG5|RTL1_HUMAN Retrotransposon-like protein 1 OS=Homo sapiens
GN=RTL1 PE=2 SV=2
Length = 1359
Score = 66.6 bits (161), Expect = 5e-11
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = -2
Query: 93 DLLQDMEEPSSGPRKEIEDPPNDLLQDLEES 1
DLLQDMEEPSSGPRKEIEDPPNDLLQDLEES
Sbjct: 72 DLLQDMEEPSSGPRKEIEDPPNDLLQDLEES 102
>sp|Q52QI2|RTL1_BOVIN Retrotransposon-like protein 1 OS=Bos taurus
GN=RTL1 PE=2 SV=2
Length = 1331
Score = 59.7 bits (143), Expect = 6e-09
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = -2
Query: 93 DLLQDMEEPSSGPRKEIEDPPNDLLQDLEES 1
DL QDMEEPSSGP +EI+DPPNDLLQDLEES
Sbjct: 61 DLRQDMEEPSSGPHREIKDPPNDLLQDLEES 91
>sp|Q7M732|RTL1_MOUSE Retrotransposon-like protein 1 OS=Mus musculus
GN=Rtl1 PE=2 SV=1
Length = 1744
Score = 44.3 bits (103), Expect = 2e-04
Identities = 18/30 (60%), Positives = 27/30 (90%)
Frame = -2
Query: 93 DLLQDMEEPSSGPRKEIEDPPNDLLQDLEE 4
DLLQ++EEPSSGP +E+++ P DLL+++EE
Sbjct: 129 DLLQEVEEPSSGPHQEMQELPTDLLREVEE 158
Score = 43.9 bits (102), Expect = 3e-04
Identities = 18/30 (60%), Positives = 27/30 (90%)
Frame = -2
Query: 93 DLLQDMEEPSSGPRKEIEDPPNDLLQDLEE 4
+LLQ++EEPSSGP +E+++ P DLLQ++EE
Sbjct: 107 NLLQEVEEPSSGPHQEMQELPTDLLQEVEE 136
