miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q9C7A8|PSF2_ARATH DNA replication complex GINS protein PSF2
OS=Arabidopsis thaliana GN=GINS2 PE=2 SV=2
Length = 210
Score = 96.3 bits (238), Expect = 5e-20
Identities = 43/58 (74%), Positives = 52/58 (89%)
Frame = +2
Query: 2 IATQVPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAERDSASSFEALPFHYVEISR 175
I T+VP+WLAVALK+RGKCT RPP WMSV+ LTQ+LEAER+S S+F+ALPF YVEI+R
Sbjct: 51 IPTKVPLWLAVALKRRGKCTFRPPGWMSVDNLTQILEAERESQSTFQALPFSYVEIAR 108
>sp|P0CQ30|PSF2_CRYNJ DNA replication complex GINS protein PSF2
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21) GN=PSF2 PE=3 SV=1
Length = 185
Score = 64.3 bits (155), Expect = 2e-10
Identities = 26/57 (45%), Positives = 42/57 (73%)
Frame = +2
Query: 5 ATQVPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAERDSASSFEALPFHYVEISR 175
A++VP+WL ++LKK+ KC I PP+W+S E+L L E++++ FE LP ++EIS+
Sbjct: 51 ASRVPLWLGLSLKKKRKCRIVPPEWLSAERLQAFLRDEKENSEGFERLPRRFMEISK 107
>sp|P0CQ31|PSF2_CRYNB DNA replication complex GINS protein PSF2
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PSF2 PE=3 SV=1
Length = 185
Score = 64.3 bits (155), Expect = 2e-10
Identities = 26/57 (45%), Positives = 42/57 (73%)
Frame = +2
Query: 5 ATQVPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAERDSASSFEALPFHYVEISR 175
A++VP+WL ++LKK+ KC I PP+W+S E+L L E++++ FE LP ++EIS+
Sbjct: 51 ASRVPLWLGLSLKKKRKCRIVPPEWLSAERLQAFLRDEKENSEGFERLPRRFMEISK 107
>sp|Q54BL9|PSF2_DICDI Probable DNA replication complex GINS protein
PSF2 OS=Dictyostelium discoideum GN=gins2 PE=3 SV=1
Length = 223
Score = 58.5 bits (140), Expect = 1e-08
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = +2
Query: 11 QVPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAERDSASSFEALPFHYVEIS 172
++P+WLA++LKK+ KCTI PPDWM+ KL + E F LP ++ EIS
Sbjct: 48 EIPLWLAISLKKKKKCTITPPDWMTYNKLKAKFQEENKIKDGFIELPENFDEIS 101
>sp|Q6C5R2|PSF2_YARLI DNA replication complex GINS protein PSF2
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PSF2
PE=3 SV=1
Length = 255
Score = 58.2 bits (139), Expect = 2e-08
Identities = 23/55 (41%), Positives = 38/55 (69%)
Frame = +2
Query: 11 QVPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAERDSASSFEALPFHYVEISR 175
+VPIW+A+ALKK+ +C PPDWM L ++L E + ++F + FH++EI++
Sbjct: 53 RVPIWMAIALKKQQRCQFVPPDWMEESNLRRILAFEHANPTAFSNVDFHWLEIAQ 107
>sp|Q9D600|PSF2_MOUSE DNA replication complex GINS protein PSF2
OS=Mus musculus GN=Gins2 PE=1 SV=1
Length = 185
Score = 57.8 bits (138), Expect = 2e-08
Identities = 25/58 (43%), Positives = 37/58 (63%)
Frame = +2
Query: 2 IATQVPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAERDSASSFEALPFHYVEISR 175
+ VP+WLA+ LK+R KC + PP+WM VEKL Q+ + ER + HY+EI++
Sbjct: 40 LPVDVPLWLAINLKQRQKCRLLPPEWMDVEKLEQMRDEERKEETFTPVPSPHYMEITK 97
>sp|Q8IHI1|PSF2_BRUMA Probable DNA replication complex GINS protein
PSF2 OS=Brugia malayi GN=BMBAC01P19.06 PE=3 SV=1
Length = 190
Score = 55.1 bits (131), Expect = 1e-07
Identities = 25/53 (47%), Positives = 38/53 (71%)
Frame = +2
Query: 14 VPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAERDSASSFEALPFHYVEIS 172
VP+W+AV L+KR KCTI PP W+ VE+L +++ AE ++F +P Y+EI+
Sbjct: 44 VPLWIAVTLRKRRKCTIIPPQWLCVEELKKLVIAE-SGTNAFGQVPRFYLEIA 95
>sp|Q7ZT46|PSF2_XENLA DNA replication complex GINS protein PSF2
OS=Xenopus laevis GN=gins2 PE=2 SV=1
Length = 185
Score = 54.3 bits (129), Expect = 2e-07
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Frame = +2
Query: 2 IATQVPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAERDSASSFEALPF-HYVEISR 175
+ +VP+WLA+ LK+R KC I PP+WM VEKL + + ER +F +P +Y+E+++
Sbjct: 40 LPVEVPLWLAINLKQRQKCRIVPPEWMDVEKLEAIRDQER-REETFTPMPSPYYMELTK 97
>sp|Q9Y248|PSF2_HUMAN DNA replication complex GINS protein PSF2
OS=Homo sapiens GN=GINS2 PE=1 SV=1
Length = 185
Score = 53.9 bits (128), Expect = 3e-07
Identities = 24/59 (40%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Frame = +2
Query: 2 IATQVPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAERDSASSFEALPF-HYVEISR 175
+ +VP+WLA+ LK+R KC + PP+WM VEKL ++ + ER +F +P +Y+E+++
Sbjct: 40 LPVEVPLWLAINLKQRQKCRLLPPEWMDVEKLEKMRDHER-KEETFTPMPSPYYMELTK 97
>sp|Q6BZ44|PSF2_DEBHA DNA replication complex GINS protein PSF2
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PSF2 PE=3 SV=2
Length = 206
Score = 53.9 bits (128), Expect = 3e-07
Identities = 22/55 (40%), Positives = 36/55 (65%)
Frame = +2
Query: 11 QVPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAERDSASSFEALPFHYVEISR 175
++PIW+AV LK + KC I PP+W+++ L + E E F LP++++EIS+
Sbjct: 53 KIPIWIAVILKSQDKCNIVPPEWLNLIYLKEKYEEELKQPHKFSVLPWNWLEISK 107
>sp|Q75A06|PSF2_ASHGO DNA replication complex GINS protein PSF2
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=PSF2 PE=3 SV=1
Length = 211
Score = 52.0 bits (123), Expect = 1e-06
Identities = 21/56 (37%), Positives = 40/56 (71%)
Frame = +2
Query: 5 ATQVPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAERDSASSFEALPFHYVEIS 172
+T+V +WLA+ LK++GKC+I P W+++++L +E E + S F LP++++ I+
Sbjct: 70 STEVSLWLALLLKQQGKCSIVAPAWLTIKQLDSFIEFELQNTSRFANLPWNWLIIA 125
>sp|Q6CRT8|PSF2_KLULA DNA replication complex GINS protein PSF2
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PSF2 PE=3
SV=1
Length = 201
Score = 49.7 bits (117), Expect = 6e-06
Identities = 19/54 (35%), Positives = 38/54 (70%)
Frame = +2
Query: 11 QVPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAERDSASSFEALPFHYVEIS 172
+V +WLA+ LK++GKC + P W+++++L + L+ E + S F LP++++ +S
Sbjct: 68 EVTLWLALLLKQQGKCNVVVPSWLTLQQLEKYLDFELKNPSRFSNLPWNWLVVS 121
>sp|Q59MA3|PSF2_CANAL DNA replication complex GINS protein PSF2
OS=Candida albicans GN=PSF2 PE=3 SV=1
Length = 155
Score = 49.3 bits (116), Expect = 7e-06
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = +2
Query: 14 VPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAERDSASSFEALPFHYVEISR 175
VP+W+A+ LK + KC+I PP W++V L + E E F LP++++E+S+
Sbjct: 6 VPLWVALILKSQDKCSIVPPKWLTVAYLKERYEDEIRKPLQFSDLPWNWLELSK 59
>sp|O62193|PSF2_CAEEL Probable DNA replication complex GINS protein
PSF2 OS=Caenorhabditis elegans GN=F31C3.5 PE=2 SV=1
Length = 180
Score = 48.9 bits (115), Expect = 1e-05
Identities = 19/57 (33%), Positives = 35/57 (61%)
Frame = +2
Query: 2 IATQVPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAERDSASSFEALPFHYVEIS 172
+ ++P+W A+ +K++ C + P WM V++L ++L +E +S LP H+ EIS
Sbjct: 41 VPCRIPVWTAILMKRKHNCKVVAPQWMDVDELKKILTSETES-QGLAKLPDHFFEIS 96
>sp|O94329|PSF2_SCHPO DNA replication complex GINS protein psf2
OS=Schizosaccharomyces pombe (strain ATCC 38366 / 972)
GN=psf2 PE=1 SV=1
Length = 183
Score = 48.1 bits (113), Expect = 2e-05
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +2
Query: 11 QVPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAERDSASSFEALPFHYVE 166
+VP+WLA+ LKK+ I PP+WM + KL + + E ++ +F LPF ++E
Sbjct: 53 RVPLWLALELKKQNLARIVPPEWMEIGKLENIRDDELEN-ETFSELPFRWLE 103
>sp|P40359|PSF2_YEAST DNA replication complex GINS protein PSF2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PSF2 PE=1 SV=1
Length = 213
Score = 47.8 bits (112), Expect = 2e-05
Identities = 17/57 (29%), Positives = 39/57 (68%)
Frame = +2
Query: 5 ATQVPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAERDSASSFEALPFHYVEISR 175
+T+V +W+A+ LK++ KC+I P W++ ++L + ++ E+ F LP++++ ++R
Sbjct: 68 STEVVLWIALLLKQQSKCSIVAPQWLTTKELDRKIQYEKTHPDRFSELPWNWLVLAR 124
>sp|Q6FS76|PSF2_CANGA DNA replication complex GINS protein PSF2
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=PSF2 PE=3 SV=1
Length = 215
Score = 47.0 bits (110), Expect = 4e-05
Identities = 17/56 (30%), Positives = 40/56 (71%)
Frame = +2
Query: 5 ATQVPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAERDSASSFEALPFHYVEIS 172
+T+V +W+A+ LK++ KC+I P W+++ +L + ++ E +++ F LP++++ I+
Sbjct: 70 STEVKLWIALLLKQQNKCSIVAPSWLTLRELNRKIQQETNNSDRFCDLPWNWLVIA 125
>sp|Q9VQY9|PSF2_DROME Probable DNA replication complex GINS protein
PSF2 OS=Drosophila melanogaster GN=Psf2 PE=1 SV=1
Length = 203
Score = 45.8 bits (107), Expect = 8e-05
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +2
Query: 14 VPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAERDSASSFEALPF-HYVEISR 175
VP+W+A L+K+ KC I PP+WM ++ L ++ E E+ S F +P HY+ +++
Sbjct: 44 VPLWMATHLRKQQKCRIVPPEWMDMDILEEIKEEEKRS-KFFTKMPCEHYMVVAQ 97
>sp|Q0UTE1|PSF2_PHANO DNA replication complex GINS protein PSF2
OS=Phaeosphaeria nodorum (strain SN15 / FGSC 10173)
GN=PSF2 PE=3 SV=1
Length = 242
Score = 45.4 bits (106), Expect = 1e-04
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 8 TQVPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAERDSASSFEALP 151
T VP+WLA+ LK++ + I PP W++ LT +L+ E D +F P
Sbjct: 50 TNVPLWLALLLKRQRRANILPPPWLNSHSLTAILDHEIDHDETFSPPP 97
>sp|Q5B0M9|PSF2_EMENI DNA replication complex GINS protein psf2
OS=Emericella nidulans GN=psf2 PE=3 SV=2
Length = 272
Score = 42.4 bits (98), Expect = 0.001
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +2
Query: 8 TQVPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAE-RDSA 130
T VP+WLA+ LK++ + I PP W+ E L+ +L+ E RD A
Sbjct: 50 TNVPLWLALLLKRQRRANILPPPWLHPESLSLILDIETRDQA 91
>sp|Q1DNY1|PSF2_COCIM DNA replication complex GINS protein PSF2
OS=Coccidioides immitis (strain RS) GN=PSF2 PE=3 SV=1
Length = 268
Score = 42.4 bits (98), Expect = 0.001
Identities = 16/39 (41%), Positives = 28/39 (71%)
Frame = +2
Query: 8 TQVPIWLAVALKKRGKCTIRPPDWMSVEKLTQVLEAERD 124
+ +P+WLA+ LK++ + I PP W++ E L++ L+AE D
Sbjct: 50 SSLPLWLALLLKRQRRANILPPPWLNTEWLSEFLKAETD 88
