miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2
OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1
Length = 629
Score = 85.1 bits (209), Expect = 1e-16
Identities = 44/47 (93%), Positives = 46/47 (97%)
Frame = +1
Query: 1 EQLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRSV 141
EQ+E ESAAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAMDVLRSV
Sbjct: 568 EQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSV 614
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5
OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=3
Length = 682
Score = 75.9 bits (185), Expect = 8e-14
Identities = 37/45 (82%), Positives = 42/45 (93%)
Frame = +1
Query: 1 EQLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLR 135
EQ EP +AAKVTGMLLEMDQ E+LHLLESP+ALKAKV+EA+DVLR
Sbjct: 617 EQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLR 661
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3
OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1
Length = 660
Score = 68.9 bits (167), Expect = 9e-12
Identities = 33/45 (73%), Positives = 40/45 (88%)
Frame = +1
Query: 1 EQLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLR 135
E+ EP AKVTGMLLEMDQ E+LHL+ESP+ALK+KV+EA+DVLR
Sbjct: 600 ERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein
At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1
Length = 609
Score = 55.8 bits (133), Expect = 8e-08
Identities = 27/46 (58%), Positives = 38/46 (82%)
Frame = +1
Query: 1 EQLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRS 138
E+LEP+ A K+TGMLLEMD++E+L LL+SP+ L +V EA +VL+S
Sbjct: 538 EKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKS 583
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus
norvegicus GN=Pabpc1 PE=2 SV=1
Length = 636
Score = 55.5 bits (132), Expect = 1e-07
Identities = 24/46 (52%), Positives = 38/46 (82%)
Frame = +1
Query: 1 EQLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRS 138
+ + P A K+TGMLLE+D +E+LH+LESP++L++KV EA+ VL++
Sbjct: 571 QAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 616
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus
musculus GN=Pabpc1 PE=1 SV=1
Length = 636
Score = 55.5 bits (132), Expect = 1e-07
Identities = 24/46 (52%), Positives = 38/46 (82%)
Frame = +1
Query: 1 EQLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRS 138
+ + P A K+TGMLLE+D +E+LH+LESP++L++KV EA+ VL++
Sbjct: 571 QAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 616
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Aspergillus clavatus (strain ATCC 1007 / CBS
513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 55.1 bits (131), Expect = 1e-07
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = +1
Query: 10 EPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDV 129
+PE A K+TGMLLEMD TE+L LLE DAL+AKV EA+ V
Sbjct: 681 QPELAGKITGMLLEMDNTELLGLLEDDDALRAKVDEALSV 720
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus
laevis GN=pabpc1-b PE=2 SV=1
Length = 633
Score = 55.1 bits (131), Expect = 1e-07
Identities = 24/46 (52%), Positives = 38/46 (82%)
Frame = +1
Query: 1 EQLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRS 138
+ + P A K+TGMLLE+D +E+LH+LESP++L++KV EA+ VL++
Sbjct: 569 QAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 614
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus
laevis GN=pabpc1-a PE=1 SV=3
Length = 633
Score = 55.1 bits (131), Expect = 1e-07
Identities = 24/46 (52%), Positives = 38/46 (82%)
Frame = +1
Query: 1 EQLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRS 138
+ + P A K+TGMLLE+D +E+LH+LESP++L++KV EA+ VL++
Sbjct: 569 QAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 614
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo
abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 55.1 bits (131), Expect = 1e-07
Identities = 24/46 (52%), Positives = 38/46 (82%)
Frame = +1
Query: 1 EQLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRS 138
+ + P A K+TGMLLE+D +E+LH+LESP++L++KV EA+ VL++
Sbjct: 571 QAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 616
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo
sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 55.1 bits (131), Expect = 1e-07
Identities = 24/46 (52%), Positives = 38/46 (82%)
Frame = +1
Query: 1 EQLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRS 138
+ + P A K+TGMLLE+D +E+LH+LESP++L++KV EA+ VL++
Sbjct: 571 QAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 616
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus
GN=PABPC1 PE=2 SV=1
Length = 636
Score = 55.1 bits (131), Expect = 1e-07
Identities = 24/46 (52%), Positives = 38/46 (82%)
Frame = +1
Query: 1 EQLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRS 138
+ + P A K+TGMLLE+D +E+LH+LESP++L++KV EA+ VL++
Sbjct: 571 QAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 616
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein
OS=Xenopus tropicalis GN=epabp PE=2 SV=1
Length = 629
Score = 54.7 bits (130), Expect = 2e-07
Identities = 24/45 (53%), Positives = 37/45 (82%)
Frame = +1
Query: 4 QLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRS 138
++ P A K+TGMLLE+D +E+LH+LESP++L +KV EA+ VL++
Sbjct: 569 EMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA 613
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B
OS=Xenopus laevis GN=epabp-b PE=2 SV=1
Length = 629
Score = 54.7 bits (130), Expect = 2e-07
Identities = 24/45 (53%), Positives = 37/45 (82%)
Frame = +1
Query: 4 QLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRS 138
++ P A K+TGMLLE+D +E+LH+LESP++L +KV EA+ VL++
Sbjct: 569 EMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA 613
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A
OS=Xenopus laevis GN=epabp-a PE=1 SV=2
Length = 629
Score = 54.7 bits (130), Expect = 2e-07
Identities = 24/45 (53%), Positives = 37/45 (82%)
Frame = +1
Query: 4 QLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRS 138
++ P A K+TGMLLE+D +E+LH+LESP++L +KV EA+ VL++
Sbjct: 569 EMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA 613
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC
A1156) GN=pab1 PE=3 SV=1
Length = 753
Score = 53.9 bits (128), Expect = 3e-07
Identities = 26/40 (65%), Positives = 32/40 (80%)
Frame = +1
Query: 10 EPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDV 129
+PE A K+TGMLLEMD TE+L LLE +AL+AKV EA+ V
Sbjct: 679 QPELAGKITGMLLEMDNTELLSLLEDDEALRAKVDEALSV 718
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM
3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 53.5 bits (127), Expect = 4e-07
Identities = 26/40 (65%), Positives = 32/40 (80%)
Frame = +1
Query: 10 EPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDV 129
+PE A K+TGMLLEMD TE+L LLE +AL+AKV EA+ V
Sbjct: 678 QPELAGKITGMLLEMDNTELLGLLEDEEALRAKVDEALSV 717
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2
Length = 732
Score = 53.5 bits (127), Expect = 4e-07
Identities = 26/40 (65%), Positives = 32/40 (80%)
Frame = +1
Query: 10 EPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDV 129
+PE A K+TGMLLEMD TE+L LLE +AL+AKV EA+ V
Sbjct: 662 QPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSV 701
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21) GN=PAB1 PE=3 SV=1
Length = 673
Score = 53.5 bits (127), Expect = 4e-07
Identities = 26/43 (60%), Positives = 33/43 (76%)
Frame = +1
Query: 4 QLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVL 132
+ +PE A K+TGMLLEMD E+LHL+ES AL+ KV EA+ VL
Sbjct: 599 ETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 53.5 bits (127), Expect = 4e-07
Identities = 26/43 (60%), Positives = 33/43 (76%)
Frame = +1
Query: 4 QLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVL 132
+ +PE A K+TGMLLEMD E+LHL+ES AL+ KV EA+ VL
Sbjct: 599 ETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=PAB1 PE=3 SV=1
Length = 651
Score = 53.1 bits (126), Expect = 5e-07
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = +1
Query: 10 EPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLR 135
+PE A K+TGM+LE+ TE+LHLLE +AL AKV EA++VL+
Sbjct: 587 QPELAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLK 628
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Aspergillus oryzae (strain ATCC 42149 / RIB
40) GN=pab1 PE=3 SV=1
Length = 765
Score = 52.8 bits (125), Expect = 7e-07
Identities = 25/40 (62%), Positives = 33/40 (82%)
Frame = +1
Query: 10 EPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDV 129
+PE A K+TGMLLEM+ TE+L LLE +AL+AKV EA++V
Sbjct: 691 QPELAGKITGMLLEMENTELLSLLEDEEALRAKVDEALNV 730
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo
sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 52.8 bits (125), Expect = 7e-07
Identities = 23/46 (50%), Positives = 38/46 (82%)
Frame = +1
Query: 1 EQLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRS 138
+ + P A K+TGMLLE+D +E+L++LESP++L++KV EA+ VL++
Sbjct: 566 QAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQA 611
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo
sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 52.4 bits (124), Expect = 9e-07
Identities = 23/39 (58%), Positives = 35/39 (89%)
Frame = +1
Query: 22 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRS 138
A K+TGMLLE+D +E+LH+LESP++L++KV EA+ VL++
Sbjct: 587 AGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 625
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 51.6 bits (122), Expect = 2e-06
Identities = 25/40 (62%), Positives = 31/40 (77%)
Frame = +1
Query: 10 EPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDV 129
+PE A K+TGMLLEMD E+L LLE +AL+AKV EA+ V
Sbjct: 680 QPELAGKITGMLLEMDNNELLGLLEDEEALRAKVDEALSV 719
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila
melanogaster GN=pAbp PE=1 SV=3
Length = 634
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/45 (51%), Positives = 34/45 (75%)
Frame = +1
Query: 1 EQLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLR 135
E + A K+TGMLLE++ +E+LH++E +ALKAKV EA+ VL+
Sbjct: 581 EHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Phaeosphaeria nodorum (strain SN15 / FGSC
10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 50.1 bits (118), Expect = 4e-06
Identities = 23/42 (54%), Positives = 32/42 (76%)
Frame = +1
Query: 4 QLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDV 129
+++PE A K+TGMLLEMD +E+++L AL+AKV EAM V
Sbjct: 677 EMQPELAGKITGMLLEMDNSELINLTADESALRAKVDEAMSV 718
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Chaetomium globosum (strain ATCC 6205 / CBS
148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3
SV=1
Length = 783
Score = 49.7 bits (117), Expect = 6e-06
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +1
Query: 1 EQLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDV 129
+ L+P+ A K+TGMLLEMD E+++LLE AL AKV EAM V
Sbjct: 705 QALQPDLAGKITGMLLEMDNAELVNLLEDEAALVAKVNEAMAV 747
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Magnaporthe oryzae (strain 70-15 / FGSC 8958)
GN=PAB1 PE=3 SV=1
Length = 762
Score = 48.9 bits (115), Expect = 1e-05
Identities = 23/43 (53%), Positives = 33/43 (76%)
Frame = +1
Query: 1 EQLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDV 129
+ + PE A K+TGMLLEMD TE++ L+E+ AL++KV EA+ V
Sbjct: 693 QAIHPELAGKITGMLLEMDNTELVALVENDGALRSKVDEALAV 735
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3
SV=1
Length = 768
Score = 48.5 bits (114), Expect = 1e-05
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +1
Query: 10 EPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDV 129
+PE A K+TGMLLEMD E+L L++ ALKAKV EA+ V
Sbjct: 694 QPELAGKITGMLLEMDNAELLALVDDDAALKAKVDEALTV 733
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo
sapiens GN=PABPC1L PE=2 SV=1
Length = 614
Score = 47.8 bits (112), Expect = 2e-05
Identities = 22/39 (56%), Positives = 33/39 (84%)
Frame = +1
Query: 22 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRS 138
A K+TGMLLE+D +E+L +LESP++L AK+ EA+ VL++
Sbjct: 564 AGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQA 602
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1
PE=3 SV=1
Length = 764
Score = 46.2 bits (108), Expect = 6e-05
Identities = 21/43 (48%), Positives = 30/43 (69%)
Frame = +1
Query: 1 EQLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDV 129
+ ++P A K+TGMLLEMD E+++L E +AL KV EA+ V
Sbjct: 686 QAIQPALAGKITGMLLEMDNAELINLFEDDNALNVKVQEALAV 728
>sp|Q62671|UBR5_RAT E3 ubiquitin-protein ligase UBR5 (Fragment)
OS=Rattus norvegicus GN=Ubr5 PE=2 SV=2
Length = 920
Score = 45.8 bits (107), Expect = 8e-05
Identities = 20/44 (45%), Positives = 34/44 (77%)
Frame = +1
Query: 1 EQLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVL 132
+ ++P A+K+TGMLLE+ ++L LL S D+L+A+V EAM+++
Sbjct: 528 QAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELI 571
>sp|Q80TP3|UBR5_MOUSE E3 ubiquitin-protein ligase UBR5 OS=Mus musculus
GN=Ubr5 PE=1 SV=2
Length = 2792
Score = 45.4 bits (106), Expect = 1e-04
Identities = 20/44 (45%), Positives = 34/44 (77%)
Frame = +1
Query: 1 EQLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVL 132
+ ++P A+K+TGMLLE+ ++L LL S D+L+A+V EAM+++
Sbjct: 2400 QAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELI 2443
>sp|O95071|UBR5_HUMAN E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens
GN=UBR5 PE=1 SV=2
Length = 2799
Score = 45.4 bits (106), Expect = 1e-04
Identities = 20/44 (45%), Positives = 34/44 (77%)
Frame = +1
Query: 1 EQLEPESAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVL 132
+ ++P A+K+TGMLLE+ ++L LL S D+L+A+V EAM+++
Sbjct: 2406 QAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELI 2449
