miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q7M732|RTL1_MOUSE Retrotransposon-like protein 1 OS=Mus musculus
            GN=Rtl1 PE=2 SV=1
          Length = 1744

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 30/30 (100%), Positives = 30/30 (100%)
 Frame = -1

Query: 91   DVVLREALQDDLQRYRQCGLHDGLQDTSQD 2
            DVVLREALQDDLQRYRQCGLHDGLQDTSQD
Sbjct: 1623 DVVLREALQDDLQRYRQCGLHDGLQDTSQD 1652




>sp|A6NKG5|RTL1_HUMAN Retrotransposon-like protein 1 OS=Homo sapiens
            GN=RTL1 PE=2 SV=2
          Length = 1359

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 30/30 (100%), Positives = 30/30 (100%)
 Frame = -1

Query: 91   DVVLREALQDDLQRYRQCGLHDGLQDTSQD 2
            DVVLREALQDDLQRYRQCGLHDGLQDTSQD
Sbjct: 1230 DVVLREALQDDLQRYRQCGLHDGLQDTSQD 1259




>sp|Q52QI2|RTL1_BOVIN Retrotransposon-like protein 1 OS=Bos taurus
            GN=RTL1 PE=2 SV=2
          Length = 1331

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 28/29 (96%), Positives = 29/29 (100%)
 Frame = -1

Query: 88   VVLREALQDDLQRYRQCGLHDGLQDTSQD 2
            VVLREALQDDLQR+RQCGLHDGLQDTSQD
Sbjct: 1216 VVLREALQDDLQRFRQCGLHDGLQDTSQD 1244