miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q8S9J8|CAP1_ARATH Probable clathrin assembly protein At4g32285
OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=2
Length = 635
Score = 88.2 bits (217), Expect = 1e-17
Identities = 39/44 (88%), Positives = 44/44 (100%)
Frame = +2
Query: 2 LRDMTPERVFGKMGHLQRLLDRFLACRPTGLAKNSRMVLIALYP 133
LR+MTPER+FGKMGHLQRLLDRFL+CRPTGLAKNSRM+LIA+YP
Sbjct: 226 LREMTPERIFGKMGHLQRLLDRFLSCRPTGLAKNSRMILIAMYP 269
>sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430
OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2
Length = 653
Score = 85.1 bits (209), Expect = 1e-16
Identities = 39/44 (88%), Positives = 43/44 (97%)
Frame = +2
Query: 2 LRDMTPERVFGKMGHLQRLLDRFLACRPTGLAKNSRMVLIALYP 133
LR+MTPER+FGKMGHLQRLLDRFL+ RPTGLAKNSRM+LIALYP
Sbjct: 246 LREMTPERIFGKMGHLQRLLDRFLSLRPTGLAKNSRMILIALYP 289
>sp|Q8GX47|CAP3_ARATH Putative clathrin assembly protein At4g02650
OS=Arabidopsis thaliana GN=At4g02650 PE=2 SV=2
Length = 611
Score = 63.5 bits (153), Expect = 4e-10
Identities = 26/42 (61%), Positives = 37/42 (88%)
Frame = +2
Query: 8 DMTPERVFGKMGHLQRLLDRFLACRPTGLAKNSRMVLIALYP 133
+M E++F ++ HLQ+LLDRFLACRPTG AKN+R+V++A+YP
Sbjct: 202 EMKTEKIFNRVQHLQQLLDRFLACRPTGNAKNNRVVIVAMYP 243
>sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050
OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1
Length = 599
Score = 61.6 bits (148), Expect = 1e-09
Identities = 26/44 (59%), Positives = 38/44 (86%)
Frame = +2
Query: 2 LRDMTPERVFGKMGHLQRLLDRFLACRPTGLAKNSRMVLIALYP 133
+ +M E++F ++ HLQ+LLDRFLACRPTG A+N+R+V++ALYP
Sbjct: 195 IAEMKTEQIFIRIQHLQQLLDRFLACRPTGNARNNRVVIVALYP 238
>sp|Q9ZVN6|AP180_ARATH Clathrin coat assembly protein AP180
OS=Arabidopsis thaliana GN=AP180 PE=1 SV=1
Length = 653
Score = 43.9 bits (102), Expect = 3e-04
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +2
Query: 2 LRDMTPERVFGKMGHLQRLLDRFLACRPTGLAKNSRMVLIALY 130
+RDM P + K+ + Q+LLDR +A RPTG AK +R+V ++LY
Sbjct: 199 VRDMKPVMLLDKITYWQKLLDRAIATRPTGDAKANRLVKMSLY 241
