miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|P49398|RS4_ORYSJ 40S ribosomal protein S4 OS=Oryza sativa subsp.
japonica GN=RPS4 PE=2 SV=3
Length = 265
Score = 46.2 bits (108), Expect(2) = 5e-07
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = +1
Query: 28 QEQEKHKGSFETIHLEDALGHQF 96
+ +EKHKGSFETIH+EDALGHQF
Sbjct: 196 KNREKHKGSFETIHVEDALGHQF 218
Score = 26.6 bits (57), Expect(2) = 5e-07
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 2 RNTGPVGVIKNRRSIKAA 55
RNTG VGVIKNR K +
Sbjct: 187 RNTGRVGVIKNREKHKGS 204
>sp|O22424|RS4_MAIZE 40S ribosomal protein S4 OS=Zea mays GN=RPS4
PE=2 SV=1
Length = 265
Score = 45.1 bits (105), Expect(2) = 1e-06
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = +1
Query: 28 QEQEKHKGSFETIHLEDALGHQF 96
+ +EKHKGSFETIH+ED+LGHQF
Sbjct: 196 KNREKHKGSFETIHVEDSLGHQF 218
Score = 26.6 bits (57), Expect(2) = 1e-06
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 2 RNTGPVGVIKNRRSIKAA 55
RNTG VGVIKNR K +
Sbjct: 187 RNTGRVGVIKNREKHKGS 204
>sp|P46299|RS4_GOSHI 40S ribosomal protein S4 OS=Gossypium hirsutum
GN=RPS4 PE=2 SV=1
Length = 262
Score = 42.0 bits (97), Expect(2) = 4e-05
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +1
Query: 28 QEQEKHKGSFETIHLEDALGHQF 96
+ +EKHKGSFETIH++DA GH+F
Sbjct: 196 KNREKHKGSFETIHVQDAAGHEF 218
Score = 24.3 bits (51), Expect(2) = 4e-05
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 2 RNTGPVGVIKNRRSIKAA 55
RN G VGVIKNR K +
Sbjct: 187 RNRGRVGVIKNREKHKGS 204
>sp|O81363|RS4_PRUAR 40S ribosomal protein S4 OS=Prunus armeniaca
GN=RPS4 PE=2 SV=1
Length = 261
Score = 42.0 bits (97), Expect(2) = 4e-05
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +1
Query: 28 QEQEKHKGSFETIHLEDALGHQF 96
+ +EKHKGSFETIH++DA GH+F
Sbjct: 192 KNREKHKGSFETIHVQDATGHEF 214
Score = 24.3 bits (51), Expect(2) = 4e-05
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 2 RNTGPVGVIKNRRSIKAA 55
RN G VGVIKNR K +
Sbjct: 183 RNRGRVGVIKNREKHKGS 200
>sp|Q8VYK6|RS43_ARATH 40S ribosomal protein S4-3 OS=Arabidopsis
thaliana GN=RPS4D PE=2 SV=2
Length = 262
Score = 41.2 bits (95), Expect(2) = 7e-05
Identities = 15/23 (65%), Positives = 21/23 (91%)
Frame = +1
Query: 28 QEQEKHKGSFETIHLEDALGHQF 96
+ +EKHKGSFETIH++D+ GH+F
Sbjct: 196 KNREKHKGSFETIHIQDSTGHEF 218
Score = 24.3 bits (51), Expect(2) = 7e-05
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 2 RNTGPVGVIKNRRSIKAA 55
RN G VGVIKNR K +
Sbjct: 187 RNRGRVGVIKNREKHKGS 204
>sp|P49204|RS42_ARATH 40S ribosomal protein S4-2 OS=Arabidopsis
thaliana GN=RPS4B PE=2 SV=4
Length = 262
Score = 41.2 bits (95), Expect(2) = 7e-05
Identities = 15/23 (65%), Positives = 21/23 (91%)
Frame = +1
Query: 28 QEQEKHKGSFETIHLEDALGHQF 96
+ +EKHKGSFETIH++D+ GH+F
Sbjct: 196 KNREKHKGSFETIHIQDSTGHEF 218
Score = 24.3 bits (51), Expect(2) = 7e-05
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 2 RNTGPVGVIKNRRSIKAA 55
RN G VGVIKNR K +
Sbjct: 187 RNRGRVGVIKNREKHKGS 204
>sp|Q93VH9|RS41_ARATH 40S ribosomal protein S4-1 OS=Arabidopsis
thaliana GN=RPS4A PE=2 SV=1
Length = 261
Score = 41.2 bits (95), Expect(2) = 7e-05
Identities = 15/23 (65%), Positives = 21/23 (91%)
Frame = +1
Query: 28 QEQEKHKGSFETIHLEDALGHQF 96
+ +EKHKGSFETIH++D+ GH+F
Sbjct: 196 KNREKHKGSFETIHIQDSTGHEF 218
Score = 24.3 bits (51), Expect(2) = 7e-05
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 2 RNTGPVGVIKNRRSIKAA 55
RN G VGVIKNR K +
Sbjct: 187 RNRGRVGVIKNREKHKGS 204
>sp|P46300|RS4_SOLTU 40S ribosomal protein S4 OS=Solanum tuberosum
GN=RPS4 PE=2 SV=1
Length = 264
Score = 40.0 bits (92), Expect(2) = 2e-04
Identities = 14/23 (60%), Positives = 21/23 (91%)
Frame = +1
Query: 28 QEQEKHKGSFETIHLEDALGHQF 96
+ +EKHKGSFET+H++D+ GH+F
Sbjct: 196 KNREKHKGSFETLHIQDSQGHEF 218
Score = 24.3 bits (51), Expect(2) = 2e-04
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 2 RNTGPVGVIKNRRSIKAA 55
RN G VGVIKNR K +
Sbjct: 187 RNRGRVGVIKNREKHKGS 204
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q6K1U0|P2C17_ORYSJ Probable protein phosphatase 2C 17 OS=Oryza
sativa subsp. japonica GN=Os02g0599150 PE=2 SV=1
Length = 735
Score = 47.8 bits (112), Expect = 2e-05
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = -3
Query: 71 RFINININMENARMTYIVKRREY 3
RFINININ ENARMTYIVKRREY
Sbjct: 525 RFINININAENARMTYIVKRREY 547
