miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q9C8Y8|FDL7_ARATH Putative F-box/FBD/LRR-repeat_field protein
At1g66290 OS=Arabidopsis thaliana GN=At1g66290 PE=4 SV=1
Length = 453
Score = 75.5 bits (184), Expect = 1e-13
Identities = 35/48 (72%), Positives = 41/48 (85%)
Frame = -2
Query: 144 IRTKRSCSPEFSDKRSGDEVDWVRDLLESLLFHVLLNLPTKDMVKTSV 1
+RTKRSCSPE SD SGDEVDW+ DL E+L+ VLLNLPTKD++KTSV
Sbjct: 9 VRTKRSCSPESSDNGSGDEVDWISDLPEALIVLVLLNLPTKDVIKTSV 56
Score = 75.1 bits (183), Expect = 1e-13
Identities = 35/42 (83%), Positives = 39/42 (92%)
Frame = +1
Query: 205 CSPESSDKRSGDEVDWLSDLPEALLVHVLLNLPTKNVVKTSV 330
CSPESSD SGDEVDW+SDLPEAL+V VLLNLPTK+V+KTSV
Sbjct: 15 CSPESSDNGSGDEVDWISDLPEALIVLVLLNLPTKDVIKTSV 56
>sp|Q9C8Y7|FDL8_ARATH Putative F-box/FBD/LRR-repeat_field protein
At1g66300 OS=Arabidopsis thaliana GN=At1g66300 PE=4 SV=1
Length = 456
Score = 73.9 bits (180), Expect = 3e-13
Identities = 35/48 (72%), Positives = 40/48 (83%)
Frame = -2
Query: 144 IRTKRSCSPEFSDKRSGDEVDWVRDLLESLLFHVLLNLPTKDMVKTSV 1
+RTKR CSPE SDK+SG EVDWVRDL ESL+ HVLLNL TKD++K V
Sbjct: 9 VRTKRLCSPESSDKKSGYEVDWVRDLPESLICHVLLNLSTKDVIKNCV 56
Score = 67.0 bits (162), Expect = 4e-11
Identities = 30/42 (71%), Positives = 36/42 (85%)
Frame = +1
Query: 205 CSPESSDKRSGDEVDWLSDLPEALLVHVLLNLPTKNVVKTSV 330
CSPESSDK+SG EVDW+ DLPE+L+ HVLLNL TK+V+K V
Sbjct: 15 CSPESSDKKSGYEVDWVRDLPESLICHVLLNLSTKDVIKNCV 56
>sp|Q9C8Y5|FBD6_ARATH FBD-associated F-box protein At1g66320
OS=Arabidopsis thaliana GN=At1g66320 PE=2 SV=1
Length = 457
Score = 70.5 bits (171), Expect = 3e-12
Identities = 37/49 (75%), Positives = 40/49 (81%), Gaps = 1/49 (2%)
Frame = -2
Query: 144 IRTKRSCSPEFSDKRSGDEVDWVR-DLLESLLFHVLLNLPTKDMVKTSV 1
+ TKRS PE SDK SGDE DWVR DL ESLLF VLLN+PTKD+VKTSV
Sbjct: 9 VLTKRSSFPESSDKNSGDEGDWVRRDLPESLLFQVLLNIPTKDLVKTSV 57
Score = 60.5 bits (145), Expect = 3e-09
Identities = 30/41 (73%), Positives = 35/41 (85%), Gaps = 1/41 (2%)
Frame = +1
Query: 211 PESSDKRSGDEVDWLS-DLPEALLVHVLLNLPTKNVVKTSV 330
PESSDK SGDE DW+ DLPE+LL VLLN+PTK++VKTSV
Sbjct: 17 PESSDKNSGDEGDWVRRDLPESLLFQVLLNIPTKDLVKTSV 57
>sp|Q9C8Y6|FBD5_ARATH FBD-associated F-box protein At1g66310
OS=Arabidopsis thaliana GN=At1g66310 PE=2 SV=1
Length = 442
Score = 61.2 bits (147), Expect = 2e-09
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = +1
Query: 226 KRSGDEVDWLSDLPEALLVHVLLNLPTKNVVKTSV 330
K+S DEVDWL DLPE+LL H+LLNLPTK+VVKTSV
Sbjct: 12 KQSDDEVDWLRDLPESLLCHILLNLPTKDVVKTSV 46
Score = 60.1 bits (144), Expect = 4e-09
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = -2
Query: 105 KRSGDEVDWVRDLLESLLFHVLLNLPTKDMVKTSV 1
K+S DEVDW+RDL ESLL H+LLNLPTKD+VKTSV
Sbjct: 12 KQSDDEVDWLRDLPESLLCHILLNLPTKDVVKTSV 46
>sp|Q9FWZ1|FBL13_ARATH F-box/LRR-repeat_field protein 13 OS=Arabidopsis
thaliana GN=FBL13 PE=2 SV=1
Length = 451
Score = 52.8 bits (125), Expect = 7e-07
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +1
Query: 229 RSGDEVDWLSDLPEALLVHVLLNLPTKNVVKTSV 330
+ DEVDW+S LP+ LL VLLNLPTK+VVKTSV
Sbjct: 12 KGSDEVDWISKLPDCLLCEVLLNLPTKDVVKTSV 45
Score = 47.4 bits (111), Expect = 3e-05
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = -2
Query: 102 RSGDEVDWVRDLLESLLFHVLLNLPTKDMVKTSV 1
+ DEVDW+ L + LL VLLNLPTKD+VKTSV
Sbjct: 12 KGSDEVDWISKLPDCLLCEVLLNLPTKDVVKTSV 45
>sp|Q4PSI6|FBD13_ARATH FBD-associated F-box protein At4g13985
OS=Arabidopsis thaliana GN=At4g13985 PE=2 SV=1
Length = 459
Score = 47.4 bits (111), Expect = 3e-05
Identities = 24/37 (64%), Positives = 29/37 (78%)
Frame = -2
Query: 111 SDKRSGDEVDWVRDLLESLLFHVLLNLPTKDMVKTSV 1
S K SGD VD +R+L + LLF +LLNLPTKD+VK SV
Sbjct: 10 SAKPSGDRVDRLRNLPDCLLFKILLNLPTKDVVKLSV 46
Score = 47.0 bits (110), Expect = 4e-05
Identities = 24/37 (64%), Positives = 28/37 (75%)
Frame = +1
Query: 220 SDKRSGDEVDWLSDLPEALLVHVLLNLPTKNVVKTSV 330
S K SGD VD L +LP+ LL +LLNLPTK+VVK SV
Sbjct: 10 SAKPSGDRVDRLRNLPDCLLFKILLNLPTKDVVKLSV 46
>sp|Q9ZV91|FBD35_ARATH Predicted FBD-associated F-box protein
At1g78730 OS=Arabidopsis thaliana GN=At1g78730 PE=2 SV=1
Length = 412
Score = 46.2 bits (108), Expect = 6e-05
Identities = 24/41 (58%), Positives = 29/41 (70%)
Frame = +1
Query: 208 SPESSDKRSGDEVDWLSDLPEALLVHVLLNLPTKNVVKTSV 330
S S D+R +DWL LP++LL V LNLPTK+VVKTSV
Sbjct: 11 STRSYDRRG--HLDWLRKLPDSLLCQVFLNLPTKDVVKTSV 49
Score = 43.5 bits (101), Expect = 4e-04
Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Frame = -2
Query: 111 SDKRSGDE---VDWVRDLLESLLFHVLLNLPTKDMVKTSV 1
S RS D +DW+R L +SLL V LNLPTKD+VKTSV
Sbjct: 10 SSTRSYDRRGHLDWLRKLPDSLLCQVFLNLPTKDVVKTSV 49
>sp|Q9ZV93|FDL10_ARATH F-box/FBD/LRR-repeat_field protein At1g78750
OS=Arabidopsis thaliana GN=At1g78750 PE=2 SV=1
Length = 458
Score = 45.4 bits (106), Expect = 1e-04
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +1
Query: 241 EVDWLSDLPEALLVHVLLNLPTKNVVKTSV 330
EVDW+S+LPE LL VL LPTK+VVK+SV
Sbjct: 16 EVDWISNLPETLLCQVLFYLPTKDVVKSSV 45
>sp|Q9FLA3|FB283_ARATH Putative F-box protein At5g44940
OS=Arabidopsis thaliana GN=At5g44940 PE=4 SV=2
Length = 377
Score = 42.4 bits (98), Expect = 0.001
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +1
Query: 238 DEVDWLSDLPEALLVHVLLNLPTKNVVKTSV 330
+E D++S+ P+ LL +LLNLPTK+ VKTSV
Sbjct: 2 EEFDYISEFPDCLLTQILLNLPTKDSVKTSV 32
