miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O81316|SCL6_ARATH Scarecrow-like protein 6 OS=Arabidopsis
           thaliana GN=SCL6 PE=1 SV=1
          Length = 558

 Score = 58.9 bits (141), Expect = 9e-09
 Identities = 32/71 (45%), Positives = 50/71 (70%)
 Frame = -2

Query: 215 ILARLNQQLPPSSLGLKPILRSAFIFKDVLTSIATGSRLNPNPLSNPWDVVFKLSSYKAF 36
           ILARLNQQL  S +G KP+ R+AF FK+ L ++      N +   NP+ ++FK+++YK+F
Sbjct: 226 ILARLNQQLS-SPVG-KPLERAAFYFKEALNNLLH----NVSQTLNPYSLIFKIAAYKSF 279

Query: 35  SEVSPLIHFTD 3
           SE+SP++ F +
Sbjct: 280 SEISPVLQFAN 290




>sp|O23210|SCL15_ARATH Scarecrow-like protein 15 OS=Arabidopsis
           thaliana GN=SCL15 PE=2 SV=3
          Length = 486

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
 Frame = -2

Query: 215 ILARLNQQLPPSSLGLKPILRSAFIFKDVLTSIATGSRLNPNPLSNPWDVVFKLSSYKAF 36
           +L+RLNQ+L   S   +P+ R+AF FK+ L S  TGS  NP  LS+  ++V ++ + K +
Sbjct: 144 VLSRLNQRL--RSPAGRPLQRAAFYFKEALGSFLTGSNRNPIRLSSWSEIVQRIRAIKEY 201

Query: 35  SEVSPL---IHFT 6
           S +SP+    HFT
Sbjct: 202 SGISPIPLFSHFT 214




>sp|Q9M000|SCL22_ARATH Scarecrow-like protein 22 OS=Arabidopsis
           thaliana GN=SCL22 PE=2 SV=1
          Length = 623

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
 Frame = -2

Query: 215 ILARLNQQLPPSSLGLK-----PILRSAFIFKDVLTSIATGSRLNPNPLSNPWDVVFKLS 51
           ILARLN  L  ++         P  R+A    + L S+   S L+P  LS P +++F+++
Sbjct: 269 ILARLNHNLNNNNDDTNNNPKPPFHRAASYITEALHSLLQDSSLSPPSLSPPQNLIFRIA 328

Query: 50  SYKAFSEVSPLIHFTD 3
           +Y+AFSE SP + F +
Sbjct: 329 AYRAFSETSPFLQFVN 344




>sp|Q7XJM8|SCL27_ARATH Scarecrow-like protein 27 OS=Arabidopsis
           thaliana GN=SCL27 PE=2 SV=1
          Length = 640

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 24/71 (33%), Positives = 39/71 (54%)
 Frame = -2

Query: 215 ILARLNQQLPPSSLGLKPILRSAFIFKDVLTSIATGSRLNPNPLSNPWDVVFKLSSYKAF 36
           ILARLN  L  SS    P  R+A    + L S+      +  PL  P +++ ++++Y++F
Sbjct: 296 ILARLNHHLNTSSNHKSPFQRAASHIAEALLSLIHNE--SSPPLITPENLILRIAAYRSF 353

Query: 35  SEVSPLIHFTD 3
           SE SP + F +
Sbjct: 354 SETSPFLQFVN 364