miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q653H7|ARFR_ORYSJ Auxin response factor 18 OS=Oryza sativa
subsp. japonica GN=ARF18 PE=2 SV=1
Length = 700
Score = 90.1 bits (222), Expect = 4e-18
Identities = 54/97 (55%), Positives = 67/97 (69%), Gaps = 3/97 (3%)
Frame = -2
Query: 292 GIQGARHAQFGLSLSDLHLNNKLQSGLFLPGFQRFD--PHSRISDGIMMARRPNGTDNLS 119
GIQGARHAQFG+SLSDLHL NKLQS L G + D RI+ G+++ P D++S
Sbjct: 457 GIQGARHAQFGISLSDLHL-NKLQSSLSPHGLHQLDHGMQPRIAAGLIIG-HPAARDDIS 514
Query: 118 CLLTIGNSNVNEKS-GNTKRHQFLLFGQPILTEQQLS 11
CLLTIG+ N+KS G Q +LFG+PILTEQQ+S
Sbjct: 515 CLLTIGSPQNNKKSDGKKAPAQLMLFGKPILTEQQIS 551
>sp|Q9AV47|ARFV_ORYSJ Auxin response factor 22 OS=Oryza sativa
subsp. japonica GN=ARF22 PE=2 SV=1
Length = 698
Score = 79.0 bits (193), Expect = 9e-15
Identities = 52/101 (51%), Positives = 63/101 (62%), Gaps = 5/101 (4%)
Frame = -2
Query: 292 GIQGARHAQFGLSLSDLHLNNKLQSGLFLPG-FQRFD---PHSRISDGIMMARRPNGTDN 125
GIQGARHAQFGL L+D H NKL GL G F R D P SRIS G +++ P DN
Sbjct: 453 GIQGARHAQFGLPLTD-HQLNKLHLGLLHSGSFNRLDAITPPSRISKGFVVSSAP-AHDN 510
Query: 124 LSCLLTIGNSNVNEKSGNTK-RHQFLLFGQPILTEQQLSRS 5
+SCLL+I V EKS + K +LFG+ I TEQQ++ S
Sbjct: 511 ISCLLSISTPQVAEKSDDRKTTPHIMLFGKAIFTEQQITSS 551
>sp|Q9SKN5|ARFJ_ARATH Auxin response factor 10 OS=Arabidopsis
thaliana GN=ARF10 PE=2 SV=1
Length = 693
Score = 65.9 bits (159), Expect = 8e-11
Identities = 51/109 (46%), Positives = 63/109 (57%), Gaps = 16/109 (14%)
Frame = -2
Query: 292 GIQGARHAQ--FGLS----LSDLHL-----NNKLQS-GLFLPGFQRFDPHSRISDGIMMA 149
GIQGAR AQ FG LSDL+L NNKL S +FL F H + A
Sbjct: 444 GIQGARQAQQLFGSPSPSLLSDLNLSSYTGNNKLHSPAMFLSSFNPRHHHYQ-------A 496
Query: 148 RRPNGTDNLSCLLTIGN-SNVNEKS---GNTKRHQFLLFGQPILTEQQL 14
R ++N+SC LT+GN + V +K G+ K HQF+LFGQPILTEQQ+
Sbjct: 497 RDSENSNNISCSLTMGNPAMVQDKKKSVGSVKTHQFVLFGQPILTEQQV 545
>sp|Q6K223|ARFH_ORYSJ Auxin response factor 8 OS=Oryza sativa subsp.
japonica GN=ARF8 PE=2 SV=1
Length = 681
Score = 64.7 bits (156), Expect = 2e-10
Identities = 47/103 (45%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Frame = -2
Query: 292 GIQGARHAQFGLSLSDLHLNNKLQSGLFLPGFQRFD-------PHSRISDGIMMARRPNG 134
GIQGARHAQFG SLSDLHL + LQS L PG +R D P RIS + M P
Sbjct: 444 GIQGARHAQFGPSLSDLHLTH-LQSSLMYPGLRRPDHVGPTSIPPPRISTDLTMGSSPPA 502
Query: 133 TDNLSCLLTIGNSNVNEKSGNTKRHQFLLFGQPILTEQQLSRS 5
L++G +K + K +LFGQ ILTE+Q+S S
Sbjct: 503 R-----ALSMG----AKKPDDAKPPGLMLFGQRILTERQMSLS 536
>sp|Q7XKK6|ARFJ_ORYSJ Auxin response factor 10 OS=Oryza sativa
subsp. japonica GN=ARF10 PE=2 SV=3
Length = 699
Score = 54.3 bits (129), Expect = 2e-07
Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Frame = -2
Query: 292 GIQGARHAQFGLSLSDLHLNN-----KLQSGLFLPGFQRFDPHSR-----ISDGIMMARR 143
GIQGARHAQF + H+ N L +G+ LP R P R IS + +
Sbjct: 453 GIQGARHAQFASPFPEFHIGNLQPNLMLYAGIRLPPADRAAPAPRPPRIIISTDLTIGS- 511
Query: 142 PNGTDNLSCLLTIGNSNVNEKSGNTKRHQFLLFGQPILTEQQL 14
P D+ +C + G +++ TK FLLFGQ ILTE+Q+
Sbjct: 512 PGKPDDAACSPSSGGKKIDD----TKPRGFLLFGQAILTEEQI 550
>sp|Q01I35|ARFJ_ORYSI Auxin response factor 10 OS=Oryza sativa
subsp. indica GN=ARF10 PE=2 SV=2
Length = 699
Score = 54.3 bits (129), Expect = 2e-07
Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Frame = -2
Query: 292 GIQGARHAQFGLSLSDLHLNN-----KLQSGLFLPGFQRFDPHSR-----ISDGIMMARR 143
GIQGARHAQF + H+ N L +G+ LP R P R IS + +
Sbjct: 453 GIQGARHAQFASPFPEFHIGNLQPNLMLYAGIRLPPADRAAPAPRPPRIIISTDLTIGS- 511
Query: 142 PNGTDNLSCLLTIGNSNVNEKSGNTKRHQFLLFGQPILTEQQL 14
P D+ +C + G +++ TK FLLFGQ ILTE+Q+
Sbjct: 512 PGKPDDAACSPSSGGKKIDD----TKPRGFLLFGQAILTEEQI 550
