miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|O82307|C3H23_ARATH Zinc finger CCCH domain-containing protein 23
OS=Arabidopsis thaliana GN=At2g25900 PE=2 SV=1
Length = 315
Score = 70.1 bits (170), Expect = 4e-12
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = +3
Query: 3 PEFKRGGCSRGENCEFSHGVFECWLHPSRYRTE 101
PEF++G C RG++CEFSHGVFECWLHPSRYRT+
Sbjct: 137 PEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQ 169
>sp|Q9ZWA1|C3H2_ARATH Zinc finger CCCH domain-containing protein 2
OS=Arabidopsis thaliana GN=At1g03790 PE=2 SV=1
Length = 393
Score = 68.6 bits (166), Expect = 1e-11
Identities = 28/34 (82%), Positives = 32/34 (94%), Gaps = 1/34 (2%)
Frame = +3
Query: 3 PEFKRGG-CSRGENCEFSHGVFECWLHPSRYRTE 101
PEF+RGG CSRG++CEF+HGVFECWLHP RYRTE
Sbjct: 129 PEFRRGGDCSRGDDCEFAHGVFECWLHPIRYRTE 162
>sp|Q9M0G2|C3H49_ARATH Zinc finger CCCH domain-containing protein 49
OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1
Length = 356
Score = 68.2 bits (165), Expect = 2e-11
Identities = 23/33 (69%), Positives = 32/33 (96%)
Frame = +3
Query: 3 PEFKRGGCSRGENCEFSHGVFECWLHPSRYRTE 101
P+F++GGC +G++CEF+HGVFECWLHP+RYRT+
Sbjct: 126 PDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQ 158
>sp|Q6L4N4|C3H35_ORYSJ Zinc finger CCCH domain-containing protein 35
OS=Oryza sativa subsp. japonica GN=Os05g0195200 PE=2
SV=1
Length = 402
Score = 68.2 bits (165), Expect = 2e-11
Identities = 24/33 (72%), Positives = 31/33 (93%)
Frame = +3
Query: 3 PEFKRGGCSRGENCEFSHGVFECWLHPSRYRTE 101
P+F++GGC RG+ CEF+HGVFECWLHP+RYRT+
Sbjct: 124 PDFRKGGCKRGDACEFAHGVFECWLHPARYRTQ 156
>sp|Q9FU27|C3H2_ORYSJ Zinc finger CCCH domain-containing protein 2
OS=Oryza sativa subsp. japonica GN=Os01g0192000 PE=2
SV=1
Length = 386
Score = 67.0 bits (162), Expect = 3e-11
Identities = 23/33 (69%), Positives = 31/33 (93%)
Frame = +3
Query: 3 PEFKRGGCSRGENCEFSHGVFECWLHPSRYRTE 101
P+F++GGC RG+ CE++HGVFECWLHP+RYRT+
Sbjct: 123 PDFRKGGCKRGDACEYAHGVFECWLHPARYRTQ 155
>sp|O82199|C3H20_ARATH Zinc finger CCCH domain-containing protein 20
OS=Arabidopsis thaliana GN=At2g19810 PE=2 SV=1
Length = 359
Score = 67.0 bits (162), Expect = 3e-11
Identities = 25/33 (75%), Positives = 30/33 (90%)
Frame = +3
Query: 3 PEFKRGGCSRGENCEFSHGVFECWLHPSRYRTE 101
PEF++G C RG+ CEFSHGVFECWLHP+RYRT+
Sbjct: 125 PEFRKGCCKRGDACEFSHGVFECWLHPARYRTQ 157
>sp|Q9LUZ4|C3H66_ARATH Zinc finger CCCH domain-containing protein 66
OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1
Length = 607
Score = 65.5 bits (158), Expect = 1e-10
Identities = 22/32 (68%), Positives = 30/32 (93%)
Frame = +3
Query: 3 PEFKRGGCSRGENCEFSHGVFECWLHPSRYRT 98
PEF++G CSRG+ CE++HG+FECWLHP++YRT
Sbjct: 256 PEFRKGSCSRGDTCEYAHGIFECWLHPAQYRT 287
>sp|Q9FKW2|C3H61_ARATH Zinc finger CCCH domain-containing protein 61
OS=Arabidopsis thaliana GN=At5g44260 PE=2 SV=1
Length = 381
Score = 64.3 bits (155), Expect = 2e-10
Identities = 27/34 (79%), Positives = 29/34 (85%), Gaps = 1/34 (2%)
Frame = +3
Query: 3 PEFKR-GGCSRGENCEFSHGVFECWLHPSRYRTE 101
PEF R G CSRG+ C F+HGVFECWLHPSRYRTE
Sbjct: 107 PEFSRHGDCSRGDECGFAHGVFECWLHPSRYRTE 140
>sp|Q9LXV4|C3H56_ARATH Zinc finger CCCH domain-containing protein 56
OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1
Length = 706
Score = 62.0 bits (149), Expect = 1e-09
Identities = 21/32 (65%), Positives = 29/32 (90%)
Frame = +3
Query: 3 PEFKRGGCSRGENCEFSHGVFECWLHPSRYRT 98
P+FK+G C +G+ CE++HGVFECWLHP++YRT
Sbjct: 304 PDFKKGSCKQGDMCEYAHGVFECWLHPAQYRT 335
>sp|P93755|C3H30_ARATH Zinc finger CCCH domain-containing protein 30
OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2
Length = 716
Score = 62.0 bits (149), Expect = 1e-09
Identities = 21/32 (65%), Positives = 29/32 (90%)
Frame = +3
Query: 3 PEFKRGGCSRGENCEFSHGVFECWLHPSRYRT 98
P+F++G C RG+ CE++HGVFECWLHP++YRT
Sbjct: 308 PDFRKGACRRGDMCEYAHGVFECWLHPAQYRT 339
>sp|Q10EL1|C3H24_ORYSJ Zinc finger CCCH domain-containing protein 24
OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2
SV=1
Length = 764
Score = 60.8 bits (146), Expect = 2e-09
Identities = 21/32 (65%), Positives = 29/32 (90%)
Frame = +3
Query: 3 PEFKRGGCSRGENCEFSHGVFECWLHPSRYRT 98
P+F++G C RG+ CE++HGVFECWLHP++YRT
Sbjct: 328 PDFRKGVCRRGDMCEYAHGVFECWLHPAQYRT 359
>sp|O65036|C3H54_ARATH Zinc finger CCCH domain-containing protein 54
OS=Arabidopsis thaliana GN=PEI1 PE=1 SV=1
Length = 245
Score = 59.7 bits (143), Expect = 5e-09
Identities = 22/32 (68%), Positives = 27/32 (84%)
Frame = +3
Query: 3 PEFKRGGCSRGENCEFSHGVFECWLHPSRYRT 98
P F+ G C RG++CEF+HGVFE WLHP+RYRT
Sbjct: 99 PAFRNGACHRGDSCEFAHGVFEYWLHPARYRT 130
>sp|Q688R3|C3H33_ORYSJ Zinc finger CCCH domain-containing protein 33
OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2
SV=1
Length = 601
Score = 59.7 bits (143), Expect = 5e-09
Identities = 22/33 (66%), Positives = 30/33 (90%), Gaps = 1/33 (3%)
Frame = +3
Query: 3 PEFKRGG-CSRGENCEFSHGVFECWLHPSRYRT 98
PEF++GG C +G+ CE++HGVFECWLHP++YRT
Sbjct: 259 PEFRKGGSCRKGDACEYAHGVFECWLHPAQYRT 291
>sp|Q9XEE6|C3H29_ARATH Zinc finger CCCH domain-containing protein 29
OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1
Length = 597
Score = 59.3 bits (142), Expect = 7e-09
Identities = 20/32 (62%), Positives = 29/32 (90%)
Frame = +3
Query: 3 PEFKRGGCSRGENCEFSHGVFECWLHPSRYRT 98
PEF++G C +G++CE++HGVFE WLHP++YRT
Sbjct: 261 PEFRKGSCPKGDSCEYAHGVFESWLHPAQYRT 292
>sp|Q84SL2|C3H50_ORYSJ Zinc finger CCCH domain-containing protein 50
OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2
SV=1
Length = 657
Score = 58.5 bits (140), Expect = 1e-08
Identities = 24/33 (72%), Positives = 28/33 (84%), Gaps = 1/33 (3%)
Frame = +3
Query: 3 PEFKR-GGCSRGENCEFSHGVFECWLHPSRYRT 98
P F+R GGC G++CEFSHGVFE WLHPS+YRT
Sbjct: 281 PNFRRPGGCPSGDSCEFSHGVFESWLHPSQYRT 313
>sp|Q2QPW2|C3H67_ORYSJ Zinc finger CCCH domain-containing protein 67
OS=Oryza sativa subsp. japonica GN=Os12g0515500 PE=2
SV=1
Length = 619
Score = 58.2 bits (139), Expect = 2e-08
Identities = 23/33 (69%), Positives = 29/33 (87%), Gaps = 1/33 (3%)
Frame = +3
Query: 3 PEFKRG-GCSRGENCEFSHGVFECWLHPSRYRT 98
PEFK+G GC RG+ CE++HGVFE WLHP++YRT
Sbjct: 220 PEFKKGAGCRRGDMCEYAHGVFESWLHPAQYRT 252
>sp|Q93ZS9|C3H47_ARATH Zinc finger CCCH domain-containing protein 47
OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1
Length = 580
Score = 58.2 bits (139), Expect = 2e-08
Identities = 19/32 (59%), Positives = 29/32 (90%)
Frame = +3
Query: 3 PEFKRGGCSRGENCEFSHGVFECWLHPSRYRT 98
PEF++G C +G++CE++HGVFE WLHP++Y+T
Sbjct: 258 PEFRKGSCPKGDSCEYAHGVFESWLHPAQYKT 289
>sp|Q65X92|C3H37_ORYSJ Zinc finger CCCH domain-containing protein 37
OS=Oryza sativa subsp. japonica GN=Os05g0525900 PE=2
SV=1
Length = 255
Score = 51.6 bits (122), Expect = 1e-06
Identities = 21/35 (60%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Frame = +3
Query: 3 PEFKR---GGCSRGENCEFSHGVFECWLHPSRYRT 98
P+F+R C RG C F+HG FE WLHPSRYRT
Sbjct: 105 PDFRRRPGAACPRGSTCPFAHGTFELWLHPSRYRT 139
>sp|Q94JI5|C3H10_ORYSJ Zinc finger CCCH domain-containing protein 10
OS=Oryza sativa subsp. japonica GN=Os01g0738400 PE=2
SV=1
Length = 225
Score = 51.6 bits (122), Expect = 1e-06
Identities = 21/35 (60%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Frame = +3
Query: 3 PEFK---RGGCSRGENCEFSHGVFECWLHPSRYRT 98
P+F+ R C RG C F+HG FE WLHPSRYRT
Sbjct: 91 PDFRVAARAACPRGSGCPFAHGTFETWLHPSRYRT 125
