miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|P08548|LIN1_NYCCO LINE-1 reverse transcriptase homolog
OS=Nycticebus coucang PE=1 SV=1
Length = 1260
Score = 62.8 bits (151), Expect = 7e-10
Identities = 27/56 (48%), Positives = 40/56 (71%)
Frame = -3
Query: 194 SSAHETFSRIDHMLGHKTSLNKFKTLEIMSSIFPSHNSMKLEVKYRKKNAKSTNTW 27
SSAH T+S+IDH+LGHK++L+KFK +EI+ IF H+ +K+E+ + T TW
Sbjct: 194 SSAHGTYSKIDHILGHKSNLSKFKKIEIIPCIFSDHHGIKVELNNNRNLHTHTKTW 249
>sp|P11369|POL2_MOUSE Retrovirus-related Pol polyprotein LINE-1
OS=Mus musculus GN=Pol PE=1 SV=2
Length = 1281
Score = 58.9 bits (141), Expect = 1e-08
Identities = 25/56 (44%), Positives = 36/56 (64%)
Frame = -3
Query: 194 SSAHETFSRIDHMLGHKTSLNKFKTLEIMSSIFPSHNSMKLEVKYRKKNAKSTNTW 27
S+ H TFS+IDH++GHKT LN++K +EI+ I H+ ++L N K T TW
Sbjct: 202 SAPHGTFSKIDHIIGHKTGLNRYKNIEIVPCILSDHHGLRLIFNNNINNGKPTFTW 257
