miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q9C9S2|FB91_ARATH F-box protein At1g78100 OS=Arabidopsis
thaliana GN=At1g78100 PE=1 SV=1
Length = 334
Score = 72.8 bits (177), Expect = 6e-13
Identities = 32/53 (60%), Positives = 42/53 (79%)
Frame = +3
Query: 60 EILRGFEKIKRLEIELPSGDLRLEKGTVLRWKAEFGKSLKGCVILAIRSIETN 218
+IL GFE+I+ LE+EL GD++LEKG ++WKAEFGK+LK CVI+A RS N
Sbjct: 104 QILSGFERIRNLEVELYGGDVKLEKGAAVKWKAEFGKTLKSCVIVAFRSATVN 156
>sp|Q9LM18|FB303_ARATH F-box protein At1g22220 OS=Arabidopsis
thaliana GN=At1g22220 PE=2 SV=1
Length = 314
Score = 71.2 bits (173), Expect = 2e-12
Identities = 32/67 (47%), Positives = 47/67 (70%)
Frame = +3
Query: 60 EILRGFEKIKRLEIELPSGDLRLEKGTVLRWKAEFGKSLKGCVILAIRSIETNGGDCNNE 239
+IL F++I+ L++ELP GD++LEKG ++WKAEFGK+LK CVI+A RS T E
Sbjct: 93 KILSRFDRIRNLDVELPGGDVKLEKGAAVKWKAEFGKTLKSCVIVAFRSAGTVSSPVAVE 152
Query: 240 DDVEIDF 260
+ + +F
Sbjct: 153 GESDAEF 159
>sp|O49508|FB237_ARATH F-box protein At4g18380 OS=Arabidopsis
thaliana GN=At4g18380 PE=2 SV=1
Length = 380
Score = 61.2 bits (147), Expect = 2e-09
Identities = 25/50 (50%), Positives = 40/50 (80%)
Frame = +3
Query: 60 EILRGFEKIKRLEIELPSGDLRLEKGTVLRWKAEFGKSLKGCVILAIRSI 209
++L+ F++IK L+IELPSG+L ++ G +L+W+AEFG +L+ CVIL S+
Sbjct: 153 QVLKNFDEIKFLKIELPSGELGIDDGVLLKWRAEFGSTLENCVILGASSV 202
>sp|Q9C534|FB19_ARATH F-box protein At1g30200 OS=Arabidopsis
thaliana GN=At1g30200 PE=2 SV=1
Length = 379
Score = 60.1 bits (144), Expect = 4e-09
Identities = 26/66 (39%), Positives = 46/66 (69%)
Frame = +3
Query: 60 EILRGFEKIKRLEIELPSGDLRLEKGTVLRWKAEFGKSLKGCVILAIRSIETNGGDCNNE 239
++L+ F +I+ L+IELP+G+L +E G +L+W+A+FG +L C+IL S+ + N+E
Sbjct: 157 QVLKNFGEIRFLKIELPTGELGIEDGILLKWRADFGSTLDNCMILGASSVIQSNSVKNHE 216
Query: 240 DDVEID 257
+ V+ D
Sbjct: 217 NSVDED 222
>sp|Q9FNK5|FB285_ARATH F-box protein At5g46170 OS=Arabidopsis
thaliana GN=At5g46170 PE=2 SV=1
Length = 395
Score = 59.3 bits (142), Expect = 7e-09
Identities = 24/50 (48%), Positives = 38/50 (76%)
Frame = +3
Query: 60 EILRGFEKIKRLEIELPSGDLRLEKGTVLRWKAEFGKSLKGCVILAIRSI 209
++L+ F++I+ L IELPSG+L ++ G +L+W+AEFG +L CVIL S+
Sbjct: 162 QVLKNFDEIRYLRIELPSGELGIDDGVLLKWRAEFGSTLDNCVILGASSV 211
