miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q0J0K1|SPL18_ORYSJ Squamosa promoter-binding-like protein 18
OS=Oryza sativa subsp. japonica GN=SPL18 PE=2 SV=1
Length = 472
Score = 153 bits (386), Expect = 4e-37
Identities = 96/165 (58%), Positives = 112/165 (67%), Gaps = 31/165 (18%)
Frame = -2
Query: 402 TMNSGSFMTSQQGTRFSSFPAPRPEPSWSGVIKSEDTSYYT----PHAVLSNR-PHFAG- 241
+M+SGSFMTSQQGTRF+SF PRPEPSW G+IKSE+T YY+ PH V+++R PHF G
Sbjct: 193 SMSSGSFMTSQQGTRFASFTPPRPEPSWPGIIKSEETPYYSHHHHPHPVMTSRQPHFVGS 252
Query: 240 --GSTSSAYS-KEGRRFPFLQDGDQISFSAGAG-----TLEVSTVCQPLLKTTAAVALLP 85
+T++A+S KEGRRFPFL +GDQISF G G TLE+S VCQ T VA P
Sbjct: 253 PSSATTAAFSPKEGRRFPFLHEGDQISFGGGGGAAAAATLEIS-VCQ-----TTVVAPPP 306
Query: 84 PESSSSNKMF-SDGLT----------------PVLDSECALSLLS 1
PESSSSNKMF SDGLT VLDS+CALSLLS
Sbjct: 307 PESSSSNKMFSSDGLTTATTTTTTAHHHHHHHQVLDSDCALSLLS 351
>sp|Q6YZE8|SPL16_ORYSJ Squamosa promoter-binding-like protein 16
OS=Oryza sativa subsp. japonica GN=SPL16 PE=2 SV=1
Length = 455
Score = 125 bits (314), Expect = 8e-29
Identities = 78/150 (52%), Positives = 93/150 (62%), Gaps = 17/150 (11%)
Frame = -2
Query: 399 MNSGSFMTSQQGTRFSSFPAPRPEPSWSGVIKSEDTSYYTPHAV---LSNRPHFAGGSTS 229
MNS S++ SQQG RFS F PRPE SW+G+IK+E++ YYT H + +S+R GSTS
Sbjct: 197 MNSASYLASQQGARFSPFATPRPEASWTGMIKTEESPYYTHHQIPLGISSRQQHFVGSTS 256
Query: 228 SAYSKEGRRFPFLQDGDQISFSAGAG----------TLEVSTVCQPLLKTTAAVALLPPE 79
GRRFPFLQ+G +ISF GAG ++VCQPLLKT A PP
Sbjct: 257 DG----GRRFPFLQEG-EISFGTGAGAGGVPMDQAAAAAAASVCQPLLKTVAPPP--PPH 309
Query: 78 ---SSSSNKMFSD-GLTPVLDSECALSLLS 1
S KMFSD GLT VLDS+CALSLLS
Sbjct: 310 GGGGSGGGKMFSDGGLTQVLDSDCALSLLS 339
