miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|O81316|SCL6_ARATH Scarecrow-like protein 6 OS=Arabidopsis
thaliana GN=SCL6 PE=1 SV=1
Length = 558
Score = 67.4 bits (163), Expect(2) = 4e-13
Identities = 39/81 (48%), Positives = 50/81 (61%)
Frame = -2
Query: 374 ILARLNYWFPAAPTAGTPLLRSAFYFKEALRVALSPTGEALAPPVSTPYDVVLKLGAYKA 195
ILARLN + G PL R+AFYFKEAL L + L PY ++ K+ AYK+
Sbjct: 226 ILARLNQQLSSP--VGKPLERAAFYFKEALNNLLHNVSQTL-----NPYSLIFKIAAYKS 278
Query: 194 FYEVSPVLQFAHLTCVQAVLD 132
F E+SPVLQFA+ T QA+L+
Sbjct: 279 FSEISPVLQFANFTSNQALLE 299
Score = 26.2 bits (56), Expect(2) = 4e-13
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 5/25 (20%)
Frame = -3
Query: 100 RLHI-----GMGHQWASFIQELAQR 41
RLHI G G QWAS +QEL R
Sbjct: 306 RLHIIDFDIGYGGQWASLMQELVLR 330
>sp|Q7XJM8|SCL27_ARATH Scarecrow-like protein 27 OS=Arabidopsis
thaliana GN=SCL27 PE=2 SV=1
Length = 640
Score = 57.4 bits (137), Expect(2) = 1e-09
Identities = 31/81 (38%), Positives = 49/81 (60%)
Frame = -2
Query: 374 ILARLNYWFPAAPTAGTPLLRSAFYFKEALRVALSPTGEALAPPVSTPYDVVLKLGAYKA 195
ILARLN+ + +P R+A + EAL LS +PP+ TP +++L++ AY++
Sbjct: 296 ILARLNHHLNTSSNHKSPFQRAASHIAEAL---LSLIHNESSPPLITPENLILRIAAYRS 352
Query: 194 FYEVSPVLQFAHLTCVQAVLD 132
F E SP LQF + T Q++L+
Sbjct: 353 FSETSPFLQFVNFTANQSILE 373
Score = 24.6 bits (52), Expect(2) = 1e-09
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 91 IGMGHQWASFIQELA 47
+G G QW+S +QELA
Sbjct: 390 VGYGGQWSSLMQELA 404
>sp|Q9M000|SCL22_ARATH Scarecrow-like protein 22 OS=Arabidopsis
thaliana GN=SCL22 PE=2 SV=1
Length = 623
Score = 48.5 bits (114), Expect(2) = 5e-08
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = -2
Query: 323 PLLRSAFYFKEALRVALSPTGEALAPP-VSTPYDVVLKLGAYKAFYEVSPVLQFAHLTCV 147
P R+A Y EAL L + +L+PP +S P +++ ++ AY+AF E SP LQF + T
Sbjct: 291 PFHRAASYITEALHSLLQDS--SLSPPSLSPPQNLIFRIAAYRAFSETSPFLQFVNFTAN 348
Query: 146 QAVLD 132
Q +L+
Sbjct: 349 QTILE 353
Score = 27.7 bits (60), Expect(2) = 5e-08
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3
Query: 91 IGMGHQWASFIQELAQRFPRGT 26
IG G QWAS IQELA + R +
Sbjct: 368 IGYGGQWASLIQELAGKRNRSS 389
>sp|O23210|SCL15_ARATH Scarecrow-like protein 15 OS=Arabidopsis
thaliana GN=SCL15 PE=2 SV=3
Length = 486
Score = 53.5 bits (127), Expect = 4e-07
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Frame = -2
Query: 374 ILARLNYWFPAAPTAGTPLLRSAFYFKEALRVALSPTGEALAP-PVSTPYDVVLKLGAYK 198
+L+RLN + AG PL R+AFYFKEAL L TG P +S+ ++V ++ A K
Sbjct: 144 VLSRLNQRLRSP--AGRPLQRAAFYFKEALGSFL--TGSNRNPIRLSSWSEIVQRIRAIK 199
Query: 197 AFYEVSPVLQFAHLTCVQAVLDQLRAPAGIP 105
+ +SP+ F+H T QA+LD L + + P
Sbjct: 200 EYSGISPIPLFSHFTANQAILDSLSSQSSSP 230
>sp|Q9FL03|SCL4_ARATH Scarecrow-like protein 4 OS=Arabidopsis
thaliana GN=SCL4 PE=1 SV=1
Length = 584
Score = 49.3 bits (116), Expect = 7e-06
Identities = 28/66 (42%), Positives = 37/66 (56%)
Frame = -2
Query: 329 GTPLLRSAFYFKEALRVALSPTGEALAPPVSTPYDVVLKLGAYKAFYEVSPVLQFAHLTC 150
G P R AFYF EAL LSP A + S+ D++L +YK + P +FAHLT
Sbjct: 250 GDPTERVAFYFTEALSNRLSPNSPATSSSSSSTEDLIL---SYKTLNDACPYSKFAHLTA 306
Query: 149 VQAVLD 132
QA+L+
Sbjct: 307 NQAILE 312
