miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q0JIC2|GAM1_ORYSJ Transcription factor GAMYB OS=Oryza sativa
subsp. japonica GN=GAM1 PE=2 SV=1
Length = 553
Score = 70.9 bits (172), Expect = 2e-12
Identities = 47/117 (40%), Positives = 54/117 (46%), Gaps = 39/117 (33%)
Frame = -1
Query: 235 LPDVSFSNLPGLYFESKNHGFMDQVNQAEVLKESEISFPWLNAAINGTF----------- 89
L VS SNL G F SK+ FMDQVNQ +LK+S+ P L+ ING
Sbjct: 209 LSAVSISNLLGQSFASKSCSFMDQVNQTGMLKQSDGVLPGLSDTINGVISSVDQFSNDSE 268
Query: 88 ----------------------------DGGHAFSNGNFSTSRPMTGPWKMELPSLQ 2
+G HAF NGNFS SRP +GP KMELPSLQ
Sbjct: 269 KLKQAVGFDYLHEANSTSKIIAPFGGALNGSHAFLNGNFSASRPTSGPLKMELPSLQ 325
>sp|A2WW87|GAM1_ORYSI Transcription factor GAMYB OS=Oryza sativa
subsp. indica GN=GAM1 PE=2 SV=1
Length = 553
Score = 70.9 bits (172), Expect = 2e-12
Identities = 47/117 (40%), Positives = 54/117 (46%), Gaps = 39/117 (33%)
Frame = -1
Query: 235 LPDVSFSNLPGLYFESKNHGFMDQVNQAEVLKESEISFPWLNAAINGTF----------- 89
L VS SNL G F SK+ FMDQVNQ +LK+S+ P L+ ING
Sbjct: 209 LSAVSISNLLGQSFASKSCSFMDQVNQTGMLKQSDGVLPGLSDTINGVISSVDQFSNDSE 268
Query: 88 ----------------------------DGGHAFSNGNFSTSRPMTGPWKMELPSLQ 2
+G HAF NGNFS SRP +GP KMELPSLQ
Sbjct: 269 KLKQAVGFDYLHEANSTSKIIAPFGGALNGSHAFLNGNFSASRPTSGPLKMELPSLQ 325
