miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|P47927|AP2_ARATH Floral homeotic protein APETALA 2
OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1
Length = 432
Score = 94.0 bits (232), Expect = 3e-19
Identities = 67/142 (47%), Positives = 83/142 (58%), Gaps = 14/142 (9%)
Frame = -2
Query: 405 AYDKAAIKCNGKEAVTNFDPSIYEDELNSTECSGKPS---DHNLDLSLGSSA-SKQKSHD 238
AYDKAAIKCNGK+AVTNFDPSIY++ELN+ E SG P+ DHNLDLSLG+SA SK KS D
Sbjct: 262 AYDKAAIKCNGKDAVTNFDPSIYDEELNA-ESSGNPTTPQDHNLDLSLGNSANSKHKSQD 320
Query: 237 I-------ADDQRHTS--MPIEVTDWRNREFQPKVQCPSSSTNVNGGKLSL-STSEHQNW 88
+ D H++ + + T N Q P SS +GG SL +E+ +
Sbjct: 321 MRLRMNQQQQDSLHSNEVLGLGQTGMLNHTPNSNHQFPGSSNIGSGGGFSLFPAAENHRF 380
Query: 87 QLNIVNPPPGQVFASAAASSGF 22
QV +AAASSGF
Sbjct: 381 D---GRASTNQVLTNAAASSGF 399
>sp|Q9FH95|TOE3_ARATH AP2-like ethylene-responsive transcription
factor TOE3 OS=Arabidopsis thaliana GN=TOE3 PE=2 SV=1
Length = 352
Score = 64.7 bits (156), Expect = 2e-10
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = -2
Query: 405 AYDKAAIKCNGKEAVTNFDPSIYEDELNSTECSGKPSDHNLDLSLGSSASKQ 250
AYDKAAIKCNGK+AVTNFDP +YE+E + + + + + HNL LSLG S+S++
Sbjct: 227 AYDKAAIKCNGKDAVTNFDPKVYEEEEDLSSETTR-NGHNLGLSLGESSSEE 277
>sp|Q9SK03|RAP27_ARATH Ethylene-responsive transcription factor
RAP2-7 OS=Arabidopsis thaliana GN=RAP2-7 PE=2 SV=2
Length = 449
Score = 57.8 bits (138), Expect = 2e-08
Identities = 55/162 (33%), Positives = 77/162 (47%), Gaps = 34/162 (20%)
Frame = -2
Query: 405 AYDKAAIKCNGKEAVTNFDPSIYEDELNSTECSGKPSDHNLDLSLGS-SASKQKSH---- 241
AYDKAAI NG+EAVTNF+ S Y++E+NS E + D NL +SL + +A KQ
Sbjct: 269 AYDKAAINTNGREAVTNFEMSSYQNEINS-ESNNSEIDLNLGISLSTGNAPKQNGRLFHF 327
Query: 240 --DIADDQRHTSMPIEVTDWRNREFQPKV-------------QCPSSSTNVNG---GKLS 115
+ + QR S+ I+ ++ + + CPS + G K S
Sbjct: 328 PSNTYETQRGVSLRID-NEYMGKPVNTPLPYGSSDHRLYWNGACPSYNNPAEGRATEKRS 386
Query: 114 LSTSEHQNW------QLNIVNP-PPG----QVFASAAASSGF 22
+ NW Q + V P PPG +F+ AAASSGF
Sbjct: 387 EAEGMMSNWGWQRPGQTSAVRPQPPGPQPPPLFSVAAASSGF 428
