miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q6UWE0|LRSM1_HUMAN E3 ubiquitin-protein ligase LRSAM1 OS=Homo
sapiens GN=LRSAM1 PE=1 SV=1
Length = 723
Score = 47.0 bits (110), Expect = 4e-05
Identities = 28/60 (46%), Positives = 39/60 (65%)
Frame = +3
Query: 3 DSVGNLTGLQTLDLRGCSTLQTFPDSVGNLTGLQTLDLSWWSTLQTLPDSVGNLTGLQTL 182
D +G LT LQ L++ +Q P S+GNLT LQTL++ + L+ LPD+VG L L+TL
Sbjct: 98 DDLGQLTALQVLNVERNQLMQ-LPRSIGNLTQLQTLNVK-DNKLKELPDTVGELRSLRTL 155
>sp|C0LGX1|Y5524_ARATH Probable LRR receptor-like
serine/threonine-protein kinase At5g65240 OS=Arabidopsis
thaliana GN=At5g65240 PE=2 SV=1
Length = 607
Score = 46.2 bits (108), Expect = 6e-05
Identities = 24/58 (41%), Positives = 35/58 (60%)
Frame = +3
Query: 9 VGNLTGLQTLDLRGCSTLQTFPDSVGNLTGLQTLDLSWWSTLQTLPDSVGNLTGLQTL 182
+G LT L+TL L+G + P+S+GNL+ L +LDL +P ++GNL LQ L
Sbjct: 84 IGILTTLKTLTLKGNGIMGGIPESIGNLSSLTSLDLEDNHLTDRIPSTLGNLKNLQFL 141
>sp|C0LGK4|Y2165_ARATH Probable LRR receptor-like
serine/threonine-protein kinase At2g16250 OS=Arabidopsis
thaliana GN=At2g16250 PE=1 SV=1
Length = 915
Score = 44.7 bits (104), Expect = 2e-04
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +3
Query: 15 NLTGLQTLDLRGCSTLQTFPDSVGNLTGLQTLDLSWWSTLQTLPDSVGNLTGLQTL 182
+L L+ LDL CS P ++GNLT L+TL+LS S +P S+G L L L
Sbjct: 126 SLLALEVLDLSSCSVNGVVPFTLGNLTSLRTLNLSQNSLTSLVPSSLGQLLNLSQL 181
Score = 42.7 bits (99), Expect = 7e-04
Identities = 26/59 (44%), Positives = 32/59 (54%)
Frame = +3
Query: 6 SVGNLTGLQTLDLRGCSTLQTFPDSVGNLTGLQTLDLSWWSTLQTLPDSVGNLTGLQTL 182
++GNLT L+TL+L S P S+G L L LDLS S LP S +L L TL
Sbjct: 147 TLGNLTSLRTLNLSQNSLTSLVPSSLGQLLNLSQLDLSRNSFTGVLPQSFSSLKNLLTL 205
>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19
OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1
Length = 1895
Score = 43.1 bits (100), Expect = 5e-04
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +3
Query: 6 SVGNLTGLQTLDLRGCSTLQTFPDSVGNLTGLQTLDLSWWSTLQTLPDSVGNLTGLQTL 182
S+ L L+TL+L GC +L+ FPDS + L+ LDLS + ++ LP S+ LT L L
Sbjct: 1391 SIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDLS-RTDIKELPSSISYLTALDEL 1448
>sp|Q80ZI6|LRSM1_MOUSE E3 ubiquitin-protein ligase LRSAM1 OS=Mus
musculus GN=Lrsam1 PE=2 SV=1
Length = 727
Score = 42.7 bits (99), Expect = 7e-04
Identities = 24/59 (40%), Positives = 40/59 (67%)
Frame = +3
Query: 6 SVGNLTGLQTLDLRGCSTLQTFPDSVGNLTGLQTLDLSWWSTLQTLPDSVGNLTGLQTL 182
S+GNL LQTL+++ + L+ PD++G L L+TLD+S + +Q LP + ++ L+TL
Sbjct: 122 SIGNLLQLQTLNVKD-NKLKELPDTLGELRSLRTLDIS-ENEIQRLPQMLAHVRTLETL 178
>sp|Q9FKZ0|DRL43_ARATH Probable disease resistance protein At5g66910
OS=Arabidopsis thaliana GN=At5g66910 PE=2 SV=1
Length = 815
Score = 42.7 bits (99), Expect = 7e-04
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +3
Query: 3 DSVGNLTGLQTLDLRGCSTLQTFPDSVGNLTGLQTLDLSWWSTLQTLPDSVGNLTGLQTL 182
+++GNL+ L+ L + C L P++ L+ L++LD+S L+ LP +G L L+ +
Sbjct: 697 EAIGNLSRLEVLRMCSCMNLSELPEATERLSNLRSLDISHCLGLRKLPQEIGKLQKLENI 756
>sp|C0LGT1|Y5129_ARATH Probable LRR receptor-like
serine/threonine-protein kinase At5g10290 OS=Arabidopsis
thaliana GN=At5g10290 PE=1 SV=1
Length = 613
Score = 42.4 bits (98), Expect = 0.001
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = +3
Query: 9 VGNLTGLQTLDLRGCSTLQTFPDSVGNLTGLQTLDLSWWSTLQTLPDSVGNLTGLQTL 182
VG L L+TL L+G P+ GNLT L +LDL +P ++GNL LQ L
Sbjct: 90 VGILENLKTLTLKGNGITGEIPEDFGNLTSLTSLDLEDNQLTGRIPSTIGNLKKLQFL 147
