miRNEST 2.0, an integrative microRNA resource :: BLAST
>sp|Q54S29|NFYA_DICDI Nuclear transcription factor Y subunit alpha
OS=Dictyostelium discoideum GN=nfyA PE=3 SV=1
Length = 517
Score = 41.2 bits (95), Expect(2) = 6e-05
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = -2
Query: 445 KAILHESRHLHALNRVRGSGGRFLSTKKLQEPDSTSNAGCHSVSGSGHFHQKGDTT 278
KA HESRH HA+ R RG GGRFL+ + D+ + A + + + + TT
Sbjct: 262 KAYQHESRHQHAIRRQRGCGGRFLTKADQAKLDAQNAANAAAAAANPNASSTSTTT 317
Score = 25.0 bits (53), Expect(2) = 6e-05
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 483 AKMEAQNKLVKARKPY 436
AK+E++NKL K RK Y
Sbjct: 249 AKLESENKLPKTRKAY 264
>sp|Q945M9|NFYA9_ARATH Nuclear transcription factor Y subunit A-9
OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1
Length = 303
Score = 40.0 bits (92), Expect(2) = 6e-05
Identities = 25/71 (35%), Positives = 35/71 (49%)
Frame = -2
Query: 454 QSPKAILHESRHLHALNRVRGSGGRFLSTKKLQEPDSTSNAGCHSVSGSGHFHQKGDTTE 275
+S K LHESRH HA+ R RG+GGRF KK S A +GH Q ++
Sbjct: 196 KSRKPYLHESRHQHAMRRPRGTGGRF--AKKTNTEASKRKA---EEKSNGHVTQSPSSSN 250
Query: 274 YEVHQSDTGKF 242
+ ++ G +
Sbjct: 251 SDQGEAWNGDY 261
Score = 26.2 bits (56), Expect(2) = 6e-05
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 483 AKMEAQNKLVKARKPY 436
AK E + KL+K+RKPY
Sbjct: 186 AKAELEKKLIKSRKPY 201
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q700W2|SPL9_ARATH Squamosa promoter-binding-like protein 9
OS=Arabidopsis thaliana GN=SPL9 PE=2 SV=2
Length = 375
Score = 62.4 bits (150), Expect = 2e-09
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Frame = -3
Query: 546 SSRNRASGLGANSFMNPEGASMAQPTAPHSAAINHFPSTSWDFKGNEGSSSSQEMPPDLG 367
++ N + A+S P +MAQP P + + + + + W FK N+ +M P L
Sbjct: 269 NNNNNNNTWRASSGFGPMTVTMAQP--PPAPSQHQYLNPPWVFKDNDN-----DMSPVLN 321
Query: 366 LGQISQPINSQFSGGGELPQ--------QSGRQYMELEHSRAYDSSTQQMHWSL 229
LG+ ++P N Q S G + + QS RQYME E++RAYDSS+ +WSL
Sbjct: 322 LGRYTEPDNCQISSGTAMGEFELSDHHHQSRRQYMEDENTRAYDSSSHHTNWSL 375
>sp|Q9M2Q6|SPL15_ARATH Squamosa promoter-binding-like protein 15
OS=Arabidopsis thaliana GN=SPL15 PE=2 SV=1
Length = 354
Score = 51.2 bits (121), Expect = 5e-06
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Frame = -3
Query: 510 SFMNPEGASMAQPTAPHSAAIN---HFPSTSWDFKGNEGSSSSQEMPPDLGLGQISQPIN 340
SF + + P + H I+ + S +W+ E S+S P + QIS+P +
Sbjct: 255 SFSDKVTMAQPPPISTHQPPISTHQQYLSQTWEVIAGEKSNSHYMSP----VSQISEPAD 310
Query: 339 SQFSGGGE-------LPQQSGRQYMELEHSRAYDSSTQQMHWSL 229
Q S G L QQ +QYME E++RAYDSS Q +WSL
Sbjct: 311 FQISNGTTMGGFELYLHQQVLKQYMEPENTRAYDSSPQHFNWSL 354
