miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|O82307|C3H23_ARATH Zinc finger CCCH domain-containing protein 23
OS=Arabidopsis thaliana GN=At2g25900 PE=2 SV=1
Length = 315
Score = 94.7 bits (234), Expect = 2e-19
Identities = 36/45 (80%), Positives = 41/45 (91%)
Frame = +2
Query: 2 HYSGTVCPEFKRGGCSRGENCEFSHGVFECWLHPSRYRTEACKDG 136
HYSGT CPEF++G C RG++CEFSHGVFECWLHPSRYRT+ CKDG
Sbjct: 130 HYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDG 174
>sp|Q9ZWA1|C3H2_ARATH Zinc finger CCCH domain-containing protein 2
OS=Arabidopsis thaliana GN=At1g03790 PE=2 SV=1
Length = 393
Score = 93.2 bits (230), Expect = 4e-19
Identities = 39/46 (84%), Positives = 43/46 (93%), Gaps = 1/46 (2%)
Frame = +2
Query: 5 YSGTVCPEFKRGG-CSRGENCEFSHGVFECWLHPSRYRTEACKDGK 139
YSG VCPEF+RGG CSRG++CEF+HGVFECWLHP RYRTEACKDGK
Sbjct: 123 YSGEVCPEFRRGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGK 168
>sp|Q9M0G2|C3H49_ARATH Zinc finger CCCH domain-containing protein 49
OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1
Length = 356
Score = 92.8 bits (229), Expect = 6e-19
Identities = 33/45 (73%), Positives = 42/45 (93%)
Frame = +2
Query: 2 HYSGTVCPEFKRGGCSRGENCEFSHGVFECWLHPSRYRTEACKDG 136
HYSGT CP+F++GGC +G++CEF+HGVFECWLHP+RYRT+ CKDG
Sbjct: 119 HYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDG 163
>sp|Q9FU27|C3H2_ORYSJ Zinc finger CCCH domain-containing protein 2
OS=Oryza sativa subsp. japonica GN=Os01g0192000 PE=2
SV=1
Length = 386
Score = 91.7 bits (226), Expect = 1e-18
Identities = 33/45 (73%), Positives = 41/45 (91%)
Frame = +2
Query: 2 HYSGTVCPEFKRGGCSRGENCEFSHGVFECWLHPSRYRTEACKDG 136
HYSGT CP+F++GGC RG+ CE++HGVFECWLHP+RYRT+ CKDG
Sbjct: 116 HYSGTACPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDG 160
>sp|O82199|C3H20_ARATH Zinc finger CCCH domain-containing protein 20
OS=Arabidopsis thaliana GN=At2g19810 PE=2 SV=1
Length = 359
Score = 91.7 bits (226), Expect = 1e-18
Identities = 35/45 (77%), Positives = 40/45 (88%)
Frame = +2
Query: 2 HYSGTVCPEFKRGGCSRGENCEFSHGVFECWLHPSRYRTEACKDG 136
HYSGT CPEF++G C RG+ CEFSHGVFECWLHP+RYRT+ CKDG
Sbjct: 118 HYSGTACPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDG 162
>sp|Q9FKW2|C3H61_ARATH Zinc finger CCCH domain-containing protein 61
OS=Arabidopsis thaliana GN=At5g44260 PE=2 SV=1
Length = 381
Score = 90.9 bits (224), Expect = 2e-18
Identities = 38/47 (80%), Positives = 41/47 (87%), Gaps = 1/47 (2%)
Frame = +2
Query: 2 HYSGTVCPEFKR-GGCSRGENCEFSHGVFECWLHPSRYRTEACKDGK 139
HY+G VCPEF R G CSRG+ C F+HGVFECWLHPSRYRTEACKDGK
Sbjct: 100 HYTGEVCPEFSRHGDCSRGDECGFAHGVFECWLHPSRYRTEACKDGK 146
>sp|Q6L4N4|C3H35_ORYSJ Zinc finger CCCH domain-containing protein 35
OS=Oryza sativa subsp. japonica GN=Os05g0195200 PE=2
SV=1
Length = 402
Score = 89.7 bits (221), Expect = 5e-18
Identities = 33/44 (75%), Positives = 40/44 (90%)
Frame = +2
Query: 5 YSGTVCPEFKRGGCSRGENCEFSHGVFECWLHPSRYRTEACKDG 136
YSGT CP+F++GGC RG+ CEF+HGVFECWLHP+RYRT+ CKDG
Sbjct: 118 YSGTACPDFRKGGCKRGDACEFAHGVFECWLHPARYRTQPCKDG 161
>sp|Q9LUZ4|C3H66_ARATH Zinc finger CCCH domain-containing protein 66
OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1
Length = 607
Score = 81.6 bits (200), Expect = 1e-15
Identities = 29/44 (65%), Positives = 37/44 (84%)
Frame = +2
Query: 2 HYSGTVCPEFKRGGCSRGENCEFSHGVFECWLHPSRYRTEACKD 133
HYS CPEF++G CSRG+ CE++HG+FECWLHP++YRT CKD
Sbjct: 249 HYSCVPCPEFRKGSCSRGDTCEYAHGIFECWLHPAQYRTRLCKD 292
>sp|P93755|C3H30_ARATH Zinc finger CCCH domain-containing protein 30
OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2
Length = 716
Score = 80.5 bits (197), Expect = 3e-15
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = +2
Query: 2 HYSGTVCPEFKRGGCSRGENCEFSHGVFECWLHPSRYRTEACKDG 136
HYS CP+F++G C RG+ CE++HGVFECWLHP++YRT CKDG
Sbjct: 301 HYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG 345
>sp|Q9LXV4|C3H56_ARATH Zinc finger CCCH domain-containing protein 56
OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1
Length = 706
Score = 79.3 bits (194), Expect = 7e-15
Identities = 28/45 (62%), Positives = 37/45 (82%)
Frame = +2
Query: 2 HYSGTVCPEFKRGGCSRGENCEFSHGVFECWLHPSRYRTEACKDG 136
HY+ CP+FK+G C +G+ CE++HGVFECWLHP++YRT CKDG
Sbjct: 297 HYTCVPCPDFKKGSCKQGDMCEYAHGVFECWLHPAQYRTRLCKDG 341
>sp|Q10EL1|C3H24_ORYSJ Zinc finger CCCH domain-containing protein 24
OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2
SV=1
Length = 764
Score = 79.3 bits (194), Expect = 7e-15
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = +2
Query: 2 HYSGTVCPEFKRGGCSRGENCEFSHGVFECWLHPSRYRTEACKDG 136
HYS CP+F++G C RG+ CE++HGVFECWLHP++YRT CKDG
Sbjct: 321 HYSCVPCPDFRKGVCRRGDMCEYAHGVFECWLHPAQYRTRLCKDG 365
>sp|Q2QPW2|C3H67_ORYSJ Zinc finger CCCH domain-containing protein 67
OS=Oryza sativa subsp. japonica GN=Os12g0515500 PE=2
SV=1
Length = 619
Score = 76.6 bits (187), Expect = 4e-14
Identities = 31/46 (67%), Positives = 37/46 (80%), Gaps = 1/46 (2%)
Frame = +2
Query: 2 HYSGTVCPEFKRG-GCSRGENCEFSHGVFECWLHPSRYRTEACKDG 136
HYS CPEFK+G GC RG+ CE++HGVFE WLHP++YRT CKDG
Sbjct: 213 HYSCVPCPEFKKGAGCRRGDMCEYAHGVFESWLHPAQYRTRLCKDG 258
>sp|Q688R3|C3H33_ORYSJ Zinc finger CCCH domain-containing protein 33
OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2
SV=1
Length = 601
Score = 72.8 bits (177), Expect = 6e-13
Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Frame = +2
Query: 5 YSGTVCPEFKRGG-CSRGENCEFSHGVFECWLHPSRYRTEACKD 133
YS CPEF++GG C +G+ CE++HGVFECWLHP++YRT CKD
Sbjct: 253 YSCVPCPEFRKGGSCRKGDACEYAHGVFECWLHPAQYRTRLCKD 296
>sp|Q84SL2|C3H50_ORYSJ Zinc finger CCCH domain-containing protein 50
OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2
SV=1
Length = 657
Score = 72.4 bits (176), Expect = 8e-13
Identities = 29/45 (64%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Frame = +2
Query: 5 YSGTVCPEFKR-GGCSRGENCEFSHGVFECWLHPSRYRTEACKDG 136
Y+ CP F+R GGC G++CEFSHGVFE WLHPS+YRT CK+G
Sbjct: 275 YTAVPCPNFRRPGGCPSGDSCEFSHGVFESWLHPSQYRTRLCKEG 319
>sp|O65036|C3H54_ARATH Zinc finger CCCH domain-containing protein 54
OS=Arabidopsis thaliana GN=PEI1 PE=1 SV=1
Length = 245
Score = 72.0 bits (175), Expect = 1e-12
Identities = 27/44 (61%), Positives = 32/44 (72%)
Frame = +2
Query: 5 YSGTVCPEFKRGGCSRGENCEFSHGVFECWLHPSRYRTEACKDG 136
Y CP F+ G C RG++CEF+HGVFE WLHP+RYRT AC G
Sbjct: 93 YCAVACPAFRNGACHRGDSCEFAHGVFEYWLHPARYRTRACNAG 136
>sp|Q9XEE6|C3H29_ARATH Zinc finger CCCH domain-containing protein 29
OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1
Length = 597
Score = 71.2 bits (173), Expect = 2e-12
Identities = 25/43 (58%), Positives = 35/43 (81%)
Frame = +2
Query: 5 YSGTVCPEFKRGGCSRGENCEFSHGVFECWLHPSRYRTEACKD 133
Y+ CPEF++G C +G++CE++HGVFE WLHP++YRT CKD
Sbjct: 255 YTCVPCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYRTRLCKD 297
>sp|Q93ZS9|C3H47_ARATH Zinc finger CCCH domain-containing protein 47
OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1
Length = 580
Score = 70.1 bits (170), Expect = 4e-12
Identities = 24/43 (55%), Positives = 35/43 (81%)
Frame = +2
Query: 5 YSGTVCPEFKRGGCSRGENCEFSHGVFECWLHPSRYRTEACKD 133
Y+ CPEF++G C +G++CE++HGVFE WLHP++Y+T CKD
Sbjct: 252 YTCVPCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYKTRLCKD 294
>sp|Q94JI5|C3H10_ORYSJ Zinc finger CCCH domain-containing protein 10
OS=Oryza sativa subsp. japonica GN=Os01g0738400 PE=2
SV=1
Length = 225
Score = 65.5 bits (158), Expect = 1e-10
Identities = 26/47 (55%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Frame = +2
Query: 5 YSGTVCPEFK---RGGCSRGENCEFSHGVFECWLHPSRYRTEACKDG 136
Y+G CP+F+ R C RG C F+HG FE WLHPSRYRT C+ G
Sbjct: 85 YTGEPCPDFRVAARAACPRGSGCPFAHGTFETWLHPSRYRTRPCRSG 131
>sp|Q65X92|C3H37_ORYSJ Zinc finger CCCH domain-containing protein 37
OS=Oryza sativa subsp. japonica GN=Os05g0525900 PE=2
SV=1
Length = 255
Score = 64.7 bits (156), Expect = 2e-10
Identities = 26/47 (55%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Frame = +2
Query: 5 YSGTVCPEFKR---GGCSRGENCEFSHGVFECWLHPSRYRTEACKDG 136
Y+G CP+F+R C RG C F+HG FE WLHPSRYRT C+ G
Sbjct: 99 YTGEPCPDFRRRPGAACPRGSTCPFAHGTFELWLHPSRYRTRPCRAG 145
>sp|Q7XSB2|C3H29_ORYSJ Putative zinc finger CCCH domain-containing
protein 29 OS=Oryza sativa subsp. japonica
GN=Os04g0487500 PE=4 SV=2
Length = 146
Score = 46.2 bits (108), Expect = 6e-05
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = +2
Query: 8 SGTVCPEFKRGGCSRGENCEFSHGVFE 88
SGT C +F++GGC+ G+ CEF+HGVF+
Sbjct: 113 SGTACLDFRKGGCNHGDACEFAHGVFD 139
