miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q5R573|RBL2A_PONAB Rab-like protein 2A OS=Pongo abelii
GN=RABL2A PE=2 SV=1
Length = 229
Score = 37.0 bits (84), Expect(2) = 3e-05
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +1
Query: 1 IICLGDSAVGKSKLMER 51
IICLGDSAVGKSKLMER
Sbjct: 24 IICLGDSAVGKSKLMER 40
Score = 29.6 bits (65), Expect(2) = 3e-05
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +2
Query: 53 FLMDGFRPQQLSKFA 97
FLMDGF+PQQLS +A
Sbjct: 41 FLMDGFQPQQLSTYA 55
>sp|Q9UNT1|RBL2B_HUMAN Rab-like protein 2B OS=Homo sapiens
GN=RABL2B PE=2 SV=1
Length = 228
Score = 37.0 bits (84), Expect(2) = 3e-05
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +1
Query: 1 IICLGDSAVGKSKLMER 51
IICLGDSAVGKSKLMER
Sbjct: 24 IICLGDSAVGKSKLMER 40
Score = 29.6 bits (65), Expect(2) = 3e-05
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +2
Query: 53 FLMDGFRPQQLSKFA 97
FLMDGF+PQQLS +A
Sbjct: 41 FLMDGFQPQQLSTYA 55
>sp|Q9UBK7|RBL2A_HUMAN Rab-like protein 2A OS=Homo sapiens
GN=RABL2A PE=2 SV=1
Length = 228
Score = 37.0 bits (84), Expect(2) = 3e-05
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +1
Query: 1 IICLGDSAVGKSKLMER 51
IICLGDSAVGKSKLMER
Sbjct: 24 IICLGDSAVGKSKLMER 40
Score = 29.6 bits (65), Expect(2) = 3e-05
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +2
Query: 53 FLMDGFRPQQLSKFA 97
FLMDGF+PQQLS +A
Sbjct: 41 FLMDGFQPQQLSTYA 55
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo sapiens
GN=FANCM PE=1 SV=2
Length = 2048
Score = 52.4 bits (124), Expect = 9e-07
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = +1
Query: 1 ISYLRTALGVKVEVCSLAGCDYIVSNRLAVERKSQS 108
IS LR G++VEVC L GCDYIVSNR+ VER+SQS
Sbjct: 1834 ISSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQS 1869
>sp|Q8BGE5|FANCM_MOUSE Fanconi anemia group M protein homolog OS=Mus
musculus GN=Fancm PE=1 SV=3
Length = 2021
Score = 49.7 bits (117), Expect = 6e-06
Identities = 23/36 (63%), Positives = 29/36 (80%)
Frame = +1
Query: 1 ISYLRTALGVKVEVCSLAGCDYIVSNRLAVERKSQS 108
IS LRT G++VE+C L GCDYIVS+R+ V R+SQS
Sbjct: 1795 ISSLRTVHGLQVEICPLNGCDYIVSSRMVVVRRSQS 1830
