miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein
type 3 OS=Schizosaccharomyces pombe (strain ATCC 38366 /
972) GN=Tf2-11 PE=4 SV=1
Length = 1333
Score = 62.0 bits (149), Expect = 1e-09
Identities = 28/45 (62%), Positives = 35/45 (77%)
Frame = +3
Query: 3 NRYPLPLVSSAFDILQGAKIFTKLDLRNAYHLIRIREGDEWKTAF 137
N YPLPL+ +QG+ IFTKLDL++AYHLIR+R+GDE K AF
Sbjct: 478 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAF 522
>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein
type 2 OS=Schizosaccharomyces pombe (strain ATCC 38366 /
972) GN=Tf2-7 PE=2 SV=1
Length = 1333
Score = 62.0 bits (149), Expect = 1e-09
Identities = 28/45 (62%), Positives = 35/45 (77%)
Frame = +3
Query: 3 NRYPLPLVSSAFDILQGAKIFTKLDLRNAYHLIRIREGDEWKTAF 137
N YPLPL+ +QG+ IFTKLDL++AYHLIR+R+GDE K AF
Sbjct: 478 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAF 522
>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein
type 1 OS=Schizosaccharomyces pombe (strain ATCC 38366 /
972) GN=Tf2-1 PE=2 SV=1
Length = 1333
Score = 62.0 bits (149), Expect = 1e-09
Identities = 28/45 (62%), Positives = 35/45 (77%)
Frame = +3
Query: 3 NRYPLPLVSSAFDILQGAKIFTKLDLRNAYHLIRIREGDEWKTAF 137
N YPLPL+ +QG+ IFTKLDL++AYHLIR+R+GDE K AF
Sbjct: 478 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAF 522
>sp|P31843|RRPO_OENBE RNA-directed DNA polymerase homolog
OS=Oenothera berteriana PE=4 SV=1
Length = 142
Score = 49.3 bits (116), Expect = 7e-06
Identities = 24/43 (55%), Positives = 29/43 (67%)
Frame = +3
Query: 3 NRYPLPLVSSAFDILQGAKIFTKLDLRNAYHLIRIREGDEWKT 131
N+YP+P V FD L A FTKLDLR+ Y +RI +GDE KT
Sbjct: 22 NKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64
>sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from
transposon gypsy OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1035
Score = 42.4 bits (98), Expect = 0.001
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +3
Query: 3 NRYPLPLVSSAFDILQGAKIFTKLDLRNAYHLIRIREGDEWKTAFN 140
+RYP+P + L AK FT LDL++ YH I + E D KT+F+
Sbjct: 253 DRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFS 298
