miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q803T2|FA40A_DANRE Protein FAM40A OS=Danio rerio GN=fam40a PE=1
SV=1
Length = 813
Score = 57.8 bits (138), Expect(2) = 2e-14
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +1
Query: 91 PKEMPTTVLQSMKLGVDVTRHKEIIVKAIS 180
P+EMPTTVLQSMKLGVDV RHKEIIVKAIS
Sbjct: 526 PEEMPTTVLQSMKLGVDVNRHKEIIVKAIS 555
Score = 40.4 bits (93), Expect(2) = 2e-14
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 39 PTSKAKTDSINILADVLPE 95
PTSKAKTDSINILADVLPE
Sbjct: 509 PTSKAKTDSINILADVLPE 527
>sp|Q5R7S4|FA40A_PONAB Protein FAM40A OS=Pongo abelii GN=FAM40A PE=2
SV=2
Length = 837
Score = 57.4 bits (137), Expect(2) = 2e-14
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = +1
Query: 91 PKEMPTTVLQSMKLGVDVTRHKEIIVKAIS 180
P+EMPTTVLQSMKLGVDV RHKE+IVKAIS
Sbjct: 550 PEEMPTTVLQSMKLGVDVNRHKEVIVKAIS 579
Score = 40.4 bits (93), Expect(2) = 2e-14
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 39 PTSKAKTDSINILADVLPE 95
PTSKAKTDSINILADVLPE
Sbjct: 533 PTSKAKTDSINILADVLPE 551
>sp|Q8C079|FA40A_MOUSE Protein FAM40A OS=Mus musculus GN=Fam40a PE=1
SV=2
Length = 837
Score = 57.4 bits (137), Expect(2) = 2e-14
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = +1
Query: 91 PKEMPTTVLQSMKLGVDVTRHKEIIVKAIS 180
P+EMPTTVLQSMKLGVDV RHKE+IVKAIS
Sbjct: 550 PEEMPTTVLQSMKLGVDVNRHKEVIVKAIS 579
Score = 40.4 bits (93), Expect(2) = 2e-14
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 39 PTSKAKTDSINILADVLPE 95
PTSKAKTDSINILADVLPE
Sbjct: 533 PTSKAKTDSINILADVLPE 551
>sp|Q9GLZ5|FA40A_MACFA Protein FAM40A OS=Macaca fascicularis
GN=FAM40A PE=2 SV=1
Length = 837
Score = 57.4 bits (137), Expect(2) = 2e-14
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = +1
Query: 91 PKEMPTTVLQSMKLGVDVTRHKEIIVKAIS 180
P+EMPTTVLQSMKLGVDV RHKE+IVKAIS
Sbjct: 550 PEEMPTTVLQSMKLGVDVNRHKEVIVKAIS 579
Score = 40.4 bits (93), Expect(2) = 2e-14
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 39 PTSKAKTDSINILADVLPE 95
PTSKAKTDSINILADVLPE
Sbjct: 533 PTSKAKTDSINILADVLPE 551
>sp|Q5VSL9|FA40A_HUMAN Protein FAM40A OS=Homo sapiens GN=FAM40A PE=1
SV=1
Length = 837
Score = 57.4 bits (137), Expect(2) = 2e-14
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = +1
Query: 91 PKEMPTTVLQSMKLGVDVTRHKEIIVKAIS 180
P+EMPTTVLQSMKLGVDV RHKE+IVKAIS
Sbjct: 550 PEEMPTTVLQSMKLGVDVNRHKEVIVKAIS 579
Score = 40.4 bits (93), Expect(2) = 2e-14
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 39 PTSKAKTDSINILADVLPE 95
PTSKAKTDSINILADVLPE
Sbjct: 533 PTSKAKTDSINILADVLPE 551
>sp|Q0P5J8|FA40A_BOVIN Protein FAM40A OS=Bos taurus GN=FAM40A PE=2
SV=1
Length = 837
Score = 57.4 bits (137), Expect(2) = 2e-14
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = +1
Query: 91 PKEMPTTVLQSMKLGVDVTRHKEIIVKAIS 180
P+EMPTTVLQSMKLGVDV RHKE+IVKAIS
Sbjct: 550 PEEMPTTVLQSMKLGVDVNRHKEVIVKAIS 579
Score = 40.4 bits (93), Expect(2) = 2e-14
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 39 PTSKAKTDSINILADVLPE 95
PTSKAKTDSINILADVLPE
Sbjct: 533 PTSKAKTDSINILADVLPE 551
>sp|Q8C9H6|FA40B_MOUSE Protein FAM40B OS=Mus musculus GN=Fam40b PE=2
SV=1
Length = 844
Score = 54.3 bits (129), Expect(2) = 2e-13
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +1
Query: 91 PKEMPTTVLQSMKLGVDVTRHKEIIVKAIS 180
P+EMP TVLQSMKLG+DV RHKEIIVK+IS
Sbjct: 556 PEEMPVTVLQSMKLGIDVNRHKEIIVKSIS 585
Score = 40.4 bits (93), Expect(2) = 2e-13
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 39 PTSKAKTDSINILADVLPE 95
PTSKAKTDSINILADVLPE
Sbjct: 539 PTSKAKTDSINILADVLPE 557
>sp|Q9ULQ0|FA40B_HUMAN Protein FAM40B OS=Homo sapiens GN=FAM40B PE=2
SV=2
Length = 834
Score = 53.9 bits (128), Expect(2) = 2e-13
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +1
Query: 91 PKEMPTTVLQSMKLGVDVTRHKEIIVKAIS 180
P+EMP TVLQSMKLG+DV RHKEIIVK+IS
Sbjct: 546 PEEMPITVLQSMKLGIDVNRHKEIIVKSIS 575
Score = 40.4 bits (93), Expect(2) = 2e-13
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 39 PTSKAKTDSINILADVLPE 95
PTSKAKTDSINILADVLPE
Sbjct: 529 PTSKAKTDSINILADVLPE 547
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q8C0X2|NHDC1_MOUSE Sodium/hydrogen exchanger-like
domain-containing protein 1 OS=Mus musculus GN=Nhedc1
PE=2 SV=1
Length = 565
Score = 48.5 bits (114), Expect = 1e-05
Identities = 22/43 (51%), Positives = 22/43 (51%)
Frame = -1
Query: 136 EPSRAEPSRAEPSRPSRAEPSRAEPSRAEPSRAEPSRAEPSRR 8
E EP EP P R EP R EP R EP R EP R P RR
Sbjct: 40 ELKEPEPKEPEPKEPERKEPERKEPERKEPERKEPERKVPGRR 82
Score = 46.6 bits (109), Expect = 5e-05
Identities = 21/42 (50%), Positives = 22/42 (52%)
Frame = -3
Query: 137 RAEPSRAEPSRAEPTEPSRAEPSRAEPSRAEPSRAEPSRAEP 12
+ E EP EP EP R EP R EP R EP R EP R P
Sbjct: 38 KPELKEPEPKEPEPKEPERKEPERKEPERKEPERKEPERKVP 79
Score = 45.4 bits (106), Expect = 1e-04
Identities = 21/46 (45%), Positives = 23/46 (50%)
Frame = -1
Query: 145 EPTEPSRAEPSRAEPSRPSRAEPSRAEPSRAEPSRAEPSRAEPSRR 8
E T + E EP P EP R EP R EP R EP R EP R+
Sbjct: 32 EETVEPKPELKEPEPKEPEPKEPERKEPERKEPERKEPERKEPERK 77
Score = 43.9 bits (102), Expect = 3e-04
Identities = 20/39 (51%), Positives = 20/39 (51%)
Frame = -3
Query: 131 EPSRAEPSRAEPTEPSRAEPSRAEPSRAEPSRAEPSRAE 15
EP EP E EP R EP R EP R EP R P R E
Sbjct: 45 EPKEPEPKEPERKEPERKEPERKEPERKEPERKVPGRRE 83
Score = 43.1 bits (100), Expect = 5e-04
Identities = 22/42 (52%), Positives = 22/42 (52%)
Frame = -1
Query: 145 EPTEPSRAEPSRAEPSRPSRAEPSRAEPSRAEPSRAEPSRAE 20
EP EP EP R EP R EP R EP R EP R P R E
Sbjct: 45 EPKEPEPKEPERKEPERK---EPERKEPERKEPERKVPGRRE 83
>sp|Q552E2|FAM21_DICDI WASH complex subunit FAM21 homolog
OS=Dictyostelium discoideum GN=fam21 PE=1 SV=1
Length = 1479
Score = 47.4 bits (111), Expect = 3e-05
Identities = 19/47 (40%), Positives = 34/47 (72%), Gaps = 2/47 (4%)
Frame = -3
Query: 149 GRADRAEPSRAEPSRAEPT--EPSRAEPSRAEPSRAEPSRAEPSRAE 15
G + EP+++EP++ EPT EP++AEP++ EP++ EP++ E + E
Sbjct: 838 GDLTKDEPAKSEPTKVEPTKVEPTKAEPTKVEPAKVEPTKVESDKKE 884
Score = 44.7 bits (104), Expect = 2e-04
Identities = 16/43 (37%), Positives = 33/43 (76%)
Frame = -1
Query: 136 EPSRAEPSRAEPSRPSRAEPSRAEPSRAEPSRAEPSRAEPSRR 8
EP+++EP++ EP++ EP++AEP++ EP++ EP++ E ++
Sbjct: 844 EPAKSEPTKVEPTK---VEPTKAEPTKVEPAKVEPTKVESDKK 883
>sp|Q9BYE2|TMPSD_HUMAN Transmembrane protease serine 13 OS=Homo
sapiens GN=TMPRSS13 PE=2 SV=3
Length = 581
Score = 47.0 bits (110), Expect = 4e-05
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = -3
Query: 137 RAEPSRAEPSRAEP--TEPSRAEPSRAEPSRAEPSRAEPSRAEPA 9
RA P++A P++A P T P RA P++A P+ P RA P RA PA
Sbjct: 33 RASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPA 77
Score = 45.8 bits (107), Expect = 8e-05
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Frame = -1
Query: 139 TEPSRAEPSRAEPSR--PSRAEPSRAEPSRAEPSRAEPSRAEPSRRS 5
T P RA P++A P+ P RA P RA P++A P+RA P+ A SR S
Sbjct: 49 TPPGRASPAQASPAGTPPGRASPGRASPAQASPARASPALASLSRSS 95
Score = 42.7 bits (99), Expect = 7e-04
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -1
Query: 139 TEPSRAEPSRAEPSR--PSRAEPSRAEPSRAEPSRAEPSRAEPSRRS 5
T P RA P++A P++ P+ P RA P++A P+ P RA P R S
Sbjct: 29 TPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRAS 75
>sp|Q5U405|TMPSD_MOUSE Transmembrane protease serine 13 OS=Mus
musculus GN=Tmprss13 PE=2 SV=2
Length = 543
Score = 45.4 bits (106), Expect = 1e-04
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -1
Query: 151 RGEPTEPSRAEPSRAEPSR-PSRAEPSRAEPSRAEPSRAEPSRAEPSRRS 5
R P P +A P+R P +A P+RA P +A P+RA P+RA PSR S
Sbjct: 27 RAPPQASPARTPPQASPARTPPQASPARAPPPQASPARASPARAPPSRSS 76
Score = 43.9 bits (102), Expect = 3e-04
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = -1
Query: 133 PSRAEPSRAEP-SRPSRAEPSRAEPSRAEPSRAEPSRAEPSRRS 5
P +A P+R P + P+RA P +A P+RA P+RA PSR+ R S
Sbjct: 38 PPQASPARTPPQASPARAPPPQASPARASPARAPPSRSSSGRSS 81
Score = 43.1 bits (100), Expect = 5e-04
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = -2
Query: 147 ASRPSRAEPSRAEPSRADRAEPSRAEPSRAEPSRAEPSRAEPSRA 13
A P +A P+R P + P +A P+RA P +A P+RA P+RA
Sbjct: 26 ARAPPQASPARTPPQASPARTPPQASPARAPPPQASPARASPARA 70
