miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q9DCT5|SDF2_MOUSE Stromal cell-derived factor 2 OS=Mus musculus
GN=Sdf2 PE=2 SV=1
Length = 211
Score = 79.7 bits (195), Expect = 5e-15
Identities = 34/43 (79%), Positives = 38/43 (88%)
Frame = +2
Query: 2 LNTGRNLHSHYFASPLSSNQEVSAFGEEGEGDHLDEWMVQCEG 130
+NTGRNLHSH+F SPLS NQEVSAFGEEGEGD+LD+W V C G
Sbjct: 97 INTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLCNG 139
>sp|Q99470|SDF2_HUMAN Stromal cell-derived factor 2 OS=Homo sapiens
GN=SDF2 PE=1 SV=2
Length = 211
Score = 79.3 bits (194), Expect = 7e-15
Identities = 34/43 (79%), Positives = 38/43 (88%)
Frame = +2
Query: 2 LNTGRNLHSHYFASPLSSNQEVSAFGEEGEGDHLDEWMVQCEG 130
+NTGRNLHSH+F SPLS NQEVSAFGEEGEGD+LD+W V C G
Sbjct: 97 VNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLCNG 139
>sp|Q3SZ45|SDF2_BOVIN Stromal cell-derived factor 2 OS=Bos taurus
GN=SDF2 PE=2 SV=1
Length = 211
Score = 79.3 bits (194), Expect = 7e-15
Identities = 34/43 (79%), Positives = 38/43 (88%)
Frame = +2
Query: 2 LNTGRNLHSHYFASPLSSNQEVSAFGEEGEGDHLDEWMVQCEG 130
+NTGRNLHSH+F SPLS NQEVSAFGEEGEGD+LD+W V C G
Sbjct: 97 VNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLCNG 139
>sp|Q9ESP1|SDF2L_MOUSE Stromal cell-derived factor 2-like protein 1
OS=Mus musculus GN=Sdf2l1 PE=2 SV=2
Length = 221
Score = 71.2 bits (173), Expect = 2e-12
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = +2
Query: 8 TGRNLHSHYFASPLSSNQEVSAFGEEGEGDHLDEWMVQCEG 130
TG+NLH+H+F SPLS+NQEVSAFGE+GEGD LD W V+C G
Sbjct: 111 TGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRCSG 151
>sp|Q9HCN8|SDF2L_HUMAN Stromal cell-derived factor 2-like protein 1
OS=Homo sapiens GN=SDF2L1 PE=1 SV=2
Length = 221
Score = 71.2 bits (173), Expect = 2e-12
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = +2
Query: 8 TGRNLHSHYFASPLSSNQEVSAFGEEGEGDHLDEWMVQCEG 130
TG+NLH+H+F SPLS+NQEVSAFGE+GEGD LD W V+C G
Sbjct: 111 TGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRCSG 151
>sp|Q3T083|SDF2L_BOVIN Stromal cell-derived factor 2-like protein 1
OS=Bos taurus GN=SDF2L1 PE=2 SV=1
Length = 221
Score = 70.1 bits (170), Expect = 4e-12
Identities = 29/41 (70%), Positives = 36/41 (87%)
Frame = +2
Query: 8 TGRNLHSHYFASPLSSNQEVSAFGEEGEGDHLDEWMVQCEG 130
TG+NLH+H+F SPL++NQEVSAFGE+GEGD LD W V+C G
Sbjct: 111 TGKNLHTHHFPSPLTNNQEVSAFGEDGEGDDLDLWTVRCSG 151
>sp|Q54P23|SDF2_DICDI Stromal cell-derived factor 2-like protein
OS=Dictyostelium discoideum GN=DDB_G0284847 PE=3 SV=1
Length = 212
Score = 54.3 bits (129), Expect = 2e-07
Identities = 24/41 (58%), Positives = 28/41 (68%)
Frame = +2
Query: 5 NTGRNLHSHYFASPLSSNQEVSAFGEEGEGDHLDEWMVQCE 127
NT +NLHSH SPL+ EVS FGE GEGD D W+V+ E
Sbjct: 109 NTKKNLHSHLAVSPLTKQNEVSCFGENGEGDTGDNWIVETE 149
>sp|P31382|PMT2_YEAST Dolichyl-phosphate-mannose--protein
mannosyltransferase 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PMT2 PE=1 SV=2
Length = 759
Score = 44.3 bits (103), Expect = 2e-04
Identities = 19/40 (47%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +2
Query: 5 NTGRNLHSHYFASPLSSNQ-EVSAFGEEGEGDHLDEWMVQ 121
+TGRNLH+H A+P+S Q EVS +G+ GD+ D W+++
Sbjct: 422 STGRNLHTHPVAAPVSKTQWEVSGYGDNVVGDNKDNWVIE 461
>sp|Q93ZE8|SDF2_ARATH Stromal cell-derived factor 2-like protein
OS=Arabidopsis thaliana GN=At2g25110 PE=1 SV=1
Length = 218
Score = 43.5 bits (101), Expect = 4e-04
Identities = 20/43 (46%), Positives = 26/43 (60%)
Frame = +2
Query: 2 LNTGRNLHSHYFASPLSSNQEVSAFGEEGEGDHLDEWMVQCEG 130
+ T + LHSH ASP+S N EVS FG++ D D W + EG
Sbjct: 110 MKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGDHWKLIIEG 152
>sp|P42934|PMT6_YEAST Dolichyl-phosphate-mannose--protein
mannosyltransferase 6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PMT6 PE=1 SV=1
Length = 759
Score = 42.7 bits (99), Expect = 7e-04
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +2
Query: 5 NTGRNLHSHYFASPLS-SNQEVSAFGEEGEGDHLDEWMVQ 121
NTG NLHSH S +S N EVS +G + GD D+W+V+
Sbjct: 426 NTGSNLHSHDVPSHVSRGNYEVSGYGSQSVGDEKDDWIVE 465
>sp|P47190|PMT3_YEAST Dolichyl-phosphate-mannose--protein
mannosyltransferase 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PMT3 PE=1 SV=2
Length = 753
Score = 42.4 bits (98), Expect = 0.001
Identities = 17/39 (43%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Frame = +2
Query: 8 TGRNLHSHYFASPLSSNQ-EVSAFGEEGEGDHLDEWMVQ 121
TG+NLH+H +P+S ++ EVSA+G+ GD+ D W+++
Sbjct: 417 TGKNLHTHEVPAPISKSEYEVSAYGDVDLGDYKDNWIIE 455
