miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q7SXW3|LRC40_DANRE Leucine-rich repeat_field-containing protein 40
OS=Danio rerio GN=lrrc40 PE=2 SV=1
Length = 601
Score = 52.4 bits (124), Expect = 9e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = -1
Query: 120 GQIVTTMNFSKNQLTTLPHRLAEFQGSLTELNLGFNKLS 4
G V +NFSKNQLT +PHR+ + + SL ++NLGFNKL+
Sbjct: 423 GNPVANVNFSKNQLTAVPHRIVDLKDSLADINLGFNKLT 461
>sp|Q6GPJ5|LRC40_XENLA Leucine-rich repeat_field-containing protein 40
OS=Xenopus laevis GN=lrrc40 PE=2 SV=1
Length = 605
Score = 51.6 bits (122), Expect = 2e-06
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = -1
Query: 126 AAGQIVTTMNFSKNQLTTLPHRLAEFQGSLTELNLGFNKLS 4
AA +TT+NFSKNQLT +P R+ E + S+ ++NLGFNK+S
Sbjct: 425 AASSPITTVNFSKNQLTEVPARIVEMKDSVYDVNLGFNKIS 465
>sp|Q5M8G4|LRC40_XENTR Leucine-rich repeat_field-containing protein 40
OS=Xenopus tropicalis GN=lrrc40 PE=2 SV=1
Length = 605
Score = 50.1 bits (118), Expect = 4e-06
Identities = 21/36 (58%), Positives = 30/36 (83%)
Frame = -1
Query: 111 VTTMNFSKNQLTTLPHRLAEFQGSLTELNLGFNKLS 4
+TT+NFSKNQLT +P R+ E + S+ ++NLGFNK+S
Sbjct: 430 ITTVNFSKNQLTEVPARIVEMKDSVCDVNLGFNKIS 465
>sp|Q5ZLN0|LRC40_CHICK Leucine-rich repeat_field-containing protein 40
OS=Gallus gallus GN=LRRC40 PE=2 SV=1
Length = 603
Score = 48.1 bits (113), Expect = 2e-05
Identities = 20/36 (55%), Positives = 29/36 (80%)
Frame = -1
Query: 111 VTTMNFSKNQLTTLPHRLAEFQGSLTELNLGFNKLS 4
VT++NFSKNQLT +P R+ E + S+ ++N GFNK+S
Sbjct: 428 VTSVNFSKNQLTAIPPRIVELKDSVCDVNFGFNKIS 463
>sp|Q5RFE9|LRC40_PONAB Leucine-rich repeat_field-containing protein 40
OS=Pongo abelii GN=LRRC40 PE=2 SV=1
Length = 602
Score = 45.4 bits (106), Expect = 1e-04
Identities = 19/37 (51%), Positives = 29/37 (78%)
Frame = -1
Query: 114 IVTTMNFSKNQLTTLPHRLAEFQGSLTELNLGFNKLS 4
I+T++NFSKNQL +P R+ E + ++++NL FNKLS
Sbjct: 426 IITSINFSKNQLCEIPKRMVELKEMVSDVNLSFNKLS 462
>sp|Q4R3P6|LRC40_MACFA Leucine-rich repeat_field-containing protein 40
OS=Macaca fascicularis GN=LRRC40 PE=2 SV=1
Length = 602
Score = 45.4 bits (106), Expect = 1e-04
Identities = 19/37 (51%), Positives = 29/37 (78%)
Frame = -1
Query: 114 IVTTMNFSKNQLTTLPHRLAEFQGSLTELNLGFNKLS 4
I+T++NFSKNQL +P R+ E + ++++NL FNKLS
Sbjct: 426 IITSINFSKNQLCEIPKRMVELKEMVSDVNLSFNKLS 462
>sp|Q9CRC8|LRC40_MOUSE Leucine-rich repeat_field-containing protein 40
OS=Mus musculus GN=Lrrc40 PE=2 SV=2
Length = 602
Score = 44.7 bits (104), Expect = 2e-04
Identities = 18/37 (48%), Positives = 28/37 (75%)
Frame = -1
Query: 114 IVTTMNFSKNQLTTLPHRLAEFQGSLTELNLGFNKLS 4
++T++NFSKNQL +P R+ E + + ++NL FNKLS
Sbjct: 426 LITSINFSKNQLCEIPQRIVELKEMVLDINLSFNKLS 462
>sp|Q9H9A6|LRC40_HUMAN Leucine-rich repeat_field-containing protein 40
OS=Homo sapiens GN=LRRC40 PE=1 SV=1
Length = 602
Score = 43.9 bits (102), Expect = 3e-04
Identities = 19/37 (51%), Positives = 29/37 (78%)
Frame = -1
Query: 114 IVTTMNFSKNQLTTLPHRLAEFQGSLTELNLGFNKLS 4
IVT++NFSKNQL +P R+ E + +++++L FNKLS
Sbjct: 426 IVTSINFSKNQLCEIPKRMVELKEMVSDVDLSFNKLS 462
