miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|P49691|RL4B_ARATH 60S ribosomal protein L4-2 OS=Arabidopsis
thaliana GN=RPL4D PE=1 SV=2
Length = 407
Score = 66.2 bits (160), Expect = 6e-11
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGSIDKPSEKTKG 106
PGGHLGRF+IWTKSA EKL++IYGS +KPSEK KG
Sbjct: 249 PGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKG 283
>sp|Q9SF40|RL4A_ARATH 60S ribosomal protein L4-1 OS=Arabidopsis
thaliana GN=RPL4A PE=2 SV=1
Length = 406
Score = 66.2 bits (160), Expect = 6e-11
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGSIDKPSEKTKG 106
PGGHLGRF+IWTKSA EKL++IYGS +KPSEK KG
Sbjct: 248 PGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKG 282
>sp|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 OS=Prunus armeniaca
GN=RPL4 PE=2 SV=1
Length = 408
Score = 63.5 bits (153), Expect = 4e-10
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGSIDKPSEKTKG 106
PGGHLGRF++WTKSA EKLD+IYGS DK SEK G
Sbjct: 250 PGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKNG 284
>sp|P49669|RL4_TRYBB 60S ribosomal protein L4 OS=Trypanosoma brucei
brucei GN=RPL4 PE=3 SV=1
Length = 374
Score = 53.9 bits (128), Expect = 3e-07
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGSIDKPSEKTKG 106
PGGH+GRFIIWTKSA EKLD I+G+ +PS G
Sbjct: 240 PGGHVGRFIIWTKSAFEKLDKIFGTFTEPSTVKSG 274
>sp|Q54Z69|RL4_DICDI 60S ribosomal protein L4 OS=Dictyostelium
discoideum GN=rpl4 PE=1 SV=1
Length = 369
Score = 53.5 bits (127), Expect = 4e-07
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGSIDKPSEKTKG 106
PGGHLGRFIIWTKSA E+LD+ +G+ K S + KG
Sbjct: 241 PGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKG 275
>sp|O02056|RL4_CAEEL 60S ribosomal protein L4 OS=Caenorhabditis
elegans GN=rpl-4 PE=1 SV=3
Length = 345
Score = 49.3 bits (116), Expect = 8e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGSIDKPSEKTK 103
PGGHLGR IIWT+SA +KLDTIYG+ S + K
Sbjct: 241 PGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLK 274
>sp|P09180|RL4_DROME 60S ribosomal protein L4 OS=Drosophila
melanogaster GN=RpL4 PE=2 SV=2
Length = 401
Score = 48.1 bits (113), Expect = 2e-05
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGSIDKPSEKTKG 106
PGGH+GRF+IWT+SA +L+ ++G+ KPS KG
Sbjct: 245 PGGHVGRFVIWTESAFARLNDLFGTWKKPSTLKKG 279
>sp|P49165|RL4_URECA 60S ribosomal protein L4 OS=Urechis caupo
GN=RPL4 PE=2 SV=1
Length = 386
Score = 47.8 bits (112), Expect = 2e-05
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGSIDKPS 91
PGGH+GRF IWT+SA ++LD IYG+ +PS
Sbjct: 241 PGGHVGRFCIWTESAFKQLDNIYGTWKRPS 270
>sp|P35679|RL4A_SCHPO 60S ribosomal protein L4-A
OS=Schizosaccharomyces pombe (strain ATCC 38366 / 972)
GN=rpl4a PE=1 SV=2
Length = 363
Score = 47.0 bits (110), Expect = 4e-05
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGSIDKPSEKTK 103
PGGHLGRF+IWTKSA LD+++GS + ++ K
Sbjct: 242 PGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKK 275
>sp|Q9P784|RL4B_SCHPO 60S ribosomal protein L4-B
OS=Schizosaccharomyces pombe (strain ATCC 38366 / 972)
GN=rpl4b PE=2 SV=1
Length = 363
Score = 46.6 bits (109), Expect = 5e-05
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGSIDKPSEKTK 103
PGGHLGRF+IWTKSA LD+++GS + ++ K
Sbjct: 242 PGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKK 275
>sp|P02385|RL4B_XENLA 60S ribosomal protein L4-B OS=Xenopus laevis
GN=rpl4-b PE=2 SV=2
Length = 401
Score = 44.7 bits (104), Expect = 2e-04
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGSIDKPSE 94
PGGH+GRF IWT+SA KLD +YG+ K ++
Sbjct: 246 PGGHVGRFCIWTESAFRKLDDLYGTWRKSAK 276
>sp|P08429|RL4A_XENLA 60S ribosomal protein L4-A OS=Xenopus laevis
GN=rpl4-a PE=2 SV=2
Length = 396
Score = 44.7 bits (104), Expect = 2e-04
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGSIDKPSE 94
PGGH+GRF IWT+SA KLD +YG+ K ++
Sbjct: 246 PGGHVGRFCIWTESAFRKLDDLYGTWRKSAK 276
>sp|P50878|RL4_RAT 60S ribosomal protein L4 OS=Rattus norvegicus
GN=Rpl4 PE=1 SV=3
Length = 421
Score = 44.3 bits (103), Expect = 2e-04
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGS 76
PGGH+GRF IWT+SA KLD +YG+
Sbjct: 242 PGGHVGRFCIWTESAFRKLDELYGT 266
>sp|Q5RCR3|RL4_PONAB 60S ribosomal protein L4 OS=Pongo abelii
GN=RPL4 PE=2 SV=1
Length = 427
Score = 44.3 bits (103), Expect = 2e-04
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGS 76
PGGH+GRF IWT+SA KLD +YG+
Sbjct: 242 PGGHVGRFCIWTESAFRKLDELYGT 266
>sp|Q9D8E6|RL4_MOUSE 60S ribosomal protein L4 OS=Mus musculus
GN=Rpl4 PE=1 SV=3
Length = 419
Score = 44.3 bits (103), Expect = 2e-04
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGS 76
PGGH+GRF IWT+SA KLD +YG+
Sbjct: 242 PGGHVGRFCIWTESAFRKLDELYGT 266
>sp|Q4R5P9|RL4_MACFA 60S ribosomal protein L4 OS=Macaca fascicularis
GN=RPL4 PE=2 SV=1
Length = 427
Score = 44.3 bits (103), Expect = 2e-04
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGS 76
PGGH+GRF IWT+SA KLD +YG+
Sbjct: 242 PGGHVGRFCIWTESAFRKLDELYGT 266
>sp|P36578|RL4_HUMAN 60S ribosomal protein L4 OS=Homo sapiens
GN=RPL4 PE=1 SV=5
Length = 427
Score = 44.3 bits (103), Expect = 2e-04
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGS 76
PGGH+GRF IWT+SA KLD +YG+
Sbjct: 242 PGGHVGRFCIWTESAFRKLDELYGT 266
>sp|Q28346|RL4_CANFA 60S ribosomal protein L4 OS=Canis familiaris
GN=RPL4 PE=1 SV=2
Length = 421
Score = 44.3 bits (103), Expect = 2e-04
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGS 76
PGGH+GRF IWT+SA KLD +YG+
Sbjct: 242 PGGHVGRFCIWTESAFRKLDDLYGT 266
>sp|Q58DW0|RL4_BOVIN 60S ribosomal protein L4 OS=Bos taurus GN=RPL4
PE=2 SV=3
Length = 422
Score = 44.3 bits (103), Expect = 2e-04
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGS 76
PGGH+GRF IWT+SA KLD +YG+
Sbjct: 242 PGGHVGRFCIWTESAFRKLDELYGT 266
>sp|P49626|RL4B_YEAST 60S ribosomal protein L4-B OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPL4B PE=1
SV=2
Length = 362
Score = 43.5 bits (101), Expect = 4e-04
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGSIDKPSEK 97
PG HLGRF+IWT++A KLD ++GS S K
Sbjct: 240 PGAHLGRFVIWTEAAFTKLDQVWGSETVASSK 271
>sp|P10664|RL4A_YEAST 60S ribosomal protein L4-A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPL4A PE=1
SV=4
Length = 362
Score = 43.5 bits (101), Expect = 4e-04
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +2
Query: 2 PGGHLGRFIIWTKSALEKLDTIYGSIDKPSEK 97
PG HLGRF+IWT++A KLD ++GS S K
Sbjct: 240 PGAHLGRFVIWTEAAFTKLDQVWGSETVASSK 271
