miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q9LW29|AFB2_ARATH Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis
thaliana GN=AFB2 PE=1 SV=1
Length = 575
Score = 81.3 bits (199), Expect = 2e-15
Identities = 36/42 (85%), Positives = 39/42 (92%)
Frame = -3
Query: 127 VLNGCKKIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSCE 2
VLNGCKK++KLEIRD PFGDTALL D+ KYETMRSLWMSSCE
Sbjct: 471 VLNGCKKMKKLEIRDSPFGDTALLADVSKYETMRSLWMSSCE 512
>sp|Q9LPW7|AFB3_ARATH Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis
thaliana GN=AFB3 PE=1 SV=1
Length = 577
Score = 79.7 bits (195), Expect = 5e-15
Identities = 35/42 (83%), Positives = 39/42 (92%)
Frame = -3
Query: 127 VLNGCKKIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSCE 2
VLNGCKK+RKLEIRD PFG+ ALL D+G+YETMRSLWMSSCE
Sbjct: 473 VLNGCKKMRKLEIRDSPFGNAALLADVGRYETMRSLWMSSCE 514
>sp|Q7XVM8|TIR1B_ORYSJ Transport inhibitor response 1-like protein
Os04g0395600 OS=Oryza sativa subsp. japonica
GN=Os04g0395600 PE=2 SV=1
Length = 575
Score = 71.2 bits (173), Expect = 2e-12
Identities = 31/41 (75%), Positives = 35/41 (85%)
Frame = -3
Query: 127 VLNGCKKIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSC 5
V+NGCK +RKLEIRD PFGD ALL + +YETMRSLWMSSC
Sbjct: 471 VMNGCKNLRKLEIRDSPFGDAALLGNFARYETMRSLWMSSC 511
>sp|Q570C0|TIR1_ARATH Protein TRANSPORT INHIBITOR RESPONSE 1
OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2
Length = 594
Score = 69.7 bits (169), Expect = 5e-12
Identities = 31/41 (75%), Positives = 34/41 (82%)
Frame = -3
Query: 127 VLNGCKKIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSC 5
VL+GC +RKLEIRDCPFGD ALL + K ETMRSLWMSSC
Sbjct: 476 VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516
>sp|Q9ZR12|GRH1_ARATH GRR1-like protein 1 OS=Arabidopsis thaliana
GN=GRH1 PE=1 SV=1
Length = 585
Score = 69.3 bits (168), Expect = 7e-12
Identities = 30/41 (73%), Positives = 35/41 (85%)
Frame = -3
Query: 127 VLNGCKKIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSC 5
+L+GC+ ++KLEIRDCPFGDTALL K ETMRSLWMSSC
Sbjct: 472 LLSGCESLKKLEIRDCPFGDTALLEHAAKLETMRSLWMSSC 512
>sp|Q0DKP3|TIR1A_ORYSJ Transport inhibitor response 1-like protein
Os05g0150500 OS=Oryza sativa subsp. japonica
GN=Os05g0150500 PE=2 SV=2
Length = 587
Score = 68.6 bits (166), Expect = 1e-11
Identities = 29/41 (70%), Positives = 34/41 (82%)
Frame = -3
Query: 127 VLNGCKKIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSC 5
+L+GCK ++KLEIRDCPFGD LL + K ETMRSLWMSSC
Sbjct: 484 ILSGCKSLKKLEIRDCPFGDKPLLANAAKLETMRSLWMSSC 524
>sp|Q2R3K5|TIRC_ORYSJ Transport inhibitor response 1-like protein
Os11g0515500 OS=Oryza sativa subsp. japonica
GN=Os11g0515500 PE=2 SV=1
Length = 568
Score = 67.4 bits (163), Expect = 3e-11
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -3
Query: 127 VLNGCKKIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSC 5
VLNGCK ++KLEIRD PFGD+ALL + +YE MRSLW+SSC
Sbjct: 465 VLNGCKNLKKLEIRDSPFGDSALLAGMHQYEAMRSLWLSSC 505
>sp|Q8RWQ8|FBX14_ARATH F-box protein FBX14 OS=Arabidopsis thaliana
GN=FBX14 PE=1 SV=1
Length = 623
Score = 55.5 bits (132), Expect = 1e-07
Identities = 23/41 (56%), Positives = 30/41 (73%)
Frame = -3
Query: 127 VLNGCKKIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSC 5
VL GC K++KLEIRD PFGD L + + +Y MR +W+SSC
Sbjct: 522 VLEGCPKLQKLEIRDSPFGDVGLRSGMHRYSNMRFVWLSSC 562
>sp|Q9LTX2|TIR1L_ARATH Transport inhibitor response 1-like protein
OS=Arabidopsis thaliana GN=At5g49980 PE=1 SV=1
Length = 619
Score = 55.1 bits (131), Expect = 1e-07
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = -3
Query: 127 VLNGCKKIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSC 5
VL GC +++KLEIRD PFGD AL + + +Y MR +WMS+C
Sbjct: 522 VLEGCPRLQKLEIRDSPFGDVALRSGMHRYYNMRFVWMSAC 562
