miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P37825|YCX5_CHLRE Uncharacterized 11.4 kDa protein in trnR-chlB
           intergenic region OS=Chlamydomonas reinhardtii PE=4 SV=1
          Length = 101

 Score = 40.8 bits (94), Expect(2) = 8e-05
 Identities = 20/32 (62%), Positives = 23/32 (71%), Gaps = 4/32 (12%)
 Frame = -3

Query: 146 INFSGQIYLLLPANCRYLY----TRQWRYHCH 63
           IN SGQIYLLLP +  Y+     TRQW+YHCH
Sbjct: 24  INISGQIYLLLPPS-EYINIGFNTRQWQYHCH 54



 Score = 24.6 bits (52), Expect(2) = 8e-05
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = -2

Query: 84  AVAVPLPLIFIFP*G 40
           AVAVPLPL FI P G
Sbjct: 67  AVAVPLPLKFICPKG 81


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6AYI2|KLDC3_RAT Kelch domain-containing protein 3 OS=Rattus
           norvegicus GN=Klhdc3 PE=2 SV=1
          Length = 382

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 22/34 (64%), Positives = 27/34 (79%)
 Frame = +2

Query: 2   VNHASVVVGEFIYSFGGYCTGEDYHSNSAIDVHV 103
           VNHA+V VG  +YSFGGYC+GEDY +   IDVH+
Sbjct: 15  VNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHI 48




>sp|Q8VEM9|KLDC3_MOUSE Kelch domain-containing protein 3 OS=Mus
           musculus GN=Klhdc3 PE=2 SV=1
          Length = 382

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 22/34 (64%), Positives = 27/34 (79%)
 Frame = +2

Query: 2   VNHASVVVGEFIYSFGGYCTGEDYHSNSAIDVHV 103
           VNHA+V VG  +YSFGGYC+GEDY +   IDVH+
Sbjct: 15  VNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHI 48




>sp|Q9BQ90|KLDC3_HUMAN Kelch domain-containing protein 3 OS=Homo
           sapiens GN=KLHDC3 PE=1 SV=1
          Length = 382

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 22/34 (64%), Positives = 27/34 (79%)
 Frame = +2

Query: 2   VNHASVVVGEFIYSFGGYCTGEDYHSNSAIDVHV 103
           VNHA+V VG  +YSFGGYC+GEDY +   IDVH+
Sbjct: 15  VNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHI 48




>sp|Q58CV6|KLDC3_BOVIN Kelch domain-containing protein 3 OS=Bos
           taurus GN=KLHDC3 PE=2 SV=2
          Length = 382

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 22/34 (64%), Positives = 27/34 (79%)
 Frame = +2

Query: 2   VNHASVVVGEFIYSFGGYCTGEDYHSNSAIDVHV 103
           VNHA+V VG  +YSFGGYC+GEDY +   IDVH+
Sbjct: 15  VNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHI 48