miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q24297|RUXF_DROME Small nuclear ribonucleoprotein F
OS=Drosophila melanogaster GN=DebB PE=1 SV=2
Length = 88
Score = 63.9 bits (154), Expect = 3e-10
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = +2
Query: 5 EYKGLLVSADGYMNLQLANTEEIVDGSCTGNLGEV 109
EYKG LVS DGYMN+QLANTEE+++GS TGNLGEV
Sbjct: 30 EYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEV 64
>sp|P62321|RUXF_XENLA Small nuclear ribonucleoprotein F OS=Xenopus
laevis GN=snrpf PE=3 SV=1
Length = 86
Score = 58.9 bits (141), Expect = 1e-08
Identities = 26/35 (74%), Positives = 31/35 (88%)
Frame = +2
Query: 5 EYKGLLVSADGYMNLQLANTEEIVDGSCTGNLGEV 109
EYKG LVS DGYMN+QLANTEE +DG+ +G+LGEV
Sbjct: 28 EYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
>sp|P62307|RUXF_MOUSE Small nuclear ribonucleoprotein F OS=Mus
musculus GN=Snrpf PE=2 SV=1
Length = 86
Score = 58.9 bits (141), Expect = 1e-08
Identities = 26/35 (74%), Positives = 31/35 (88%)
Frame = +2
Query: 5 EYKGLLVSADGYMNLQLANTEEIVDGSCTGNLGEV 109
EYKG LVS DGYMN+QLANTEE +DG+ +G+LGEV
Sbjct: 28 EYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
>sp|P62306|RUXF_HUMAN Small nuclear ribonucleoprotein F OS=Homo
sapiens GN=SNRPF PE=1 SV=1
Length = 86
Score = 58.9 bits (141), Expect = 1e-08
Identities = 26/35 (74%), Positives = 31/35 (88%)
Frame = +2
Query: 5 EYKGLLVSADGYMNLQLANTEEIVDGSCTGNLGEV 109
EYKG LVS DGYMN+QLANTEE +DG+ +G+LGEV
Sbjct: 28 EYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
>sp|Q3T0Z8|RUXF_BOVIN Small nuclear ribonucleoprotein F OS=Bos
taurus GN=SNRPF PE=3 SV=2
Length = 86
Score = 58.9 bits (141), Expect = 1e-08
Identities = 26/35 (74%), Positives = 31/35 (88%)
Frame = +2
Query: 5 EYKGLLVSADGYMNLQLANTEEIVDGSCTGNLGEV 109
EYKG LVS DGYMN+QLANTEE +DG+ +G+LGEV
Sbjct: 28 EYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
>sp|Q9SUM2|RUXF_ARATH Probable small nuclear ribonucleoprotein F
OS=Arabidopsis thaliana GN=At4g30220 PE=2 SV=1
Length = 88
Score = 57.4 bits (137), Expect = 3e-08
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = +2
Query: 5 EYKGLLVSADGYMNLQLANTEEIVDGSCTGNLGEV 109
EYKG L S D YMNLQL NTEE +DG TGNLGE+
Sbjct: 29 EYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEI 63
>sp|P34659|RUXF_CAEEL Probable small nuclear ribonucleoprotein F
OS=Caenorhabditis elegans GN=snr-5 PE=1 SV=1
Length = 85
Score = 53.9 bits (128), Expect = 3e-07
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +2
Query: 5 EYKGLLVSADGYMNLQLANTEEIVDGSCTGNLGEV 109
EYKG+LV+ D YMNLQLA+ EE +DG+ GNLGE+
Sbjct: 30 EYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEI 64
>sp|O59734|RUXF_SCHPO Probable small nuclear ribonucleoprotein F
OS=Schizosaccharomyces pombe (strain ATCC 38366 / 972)
GN=smf1 PE=2 SV=1
Length = 78
Score = 52.0 bits (123), Expect = 1e-06
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = +2
Query: 5 EYKGLLVSADGYMNLQLANTEEIVDGSCTGNLGEV 109
EYKG L S D YMNLQL N EE+VDG TG+LGE+
Sbjct: 29 EYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEI 63
>sp|Q54XP2|RUXF_DICDI Small nuclear ribonucleoprotein F
OS=Dictyostelium discoideum GN=snrpf PE=3 SV=1
Length = 91
Score = 49.3 bits (116), Expect = 8e-06
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +2
Query: 5 EYKGLLVSADGYMNLQLANTEEIVDGSCTGNLGEV 109
EY+G+L S D YMNLQLA TEE +DG+ G LGEV
Sbjct: 31 EYRGILASVDSYMNLQLAATEEWIDGANKGPLGEV 65
>sp|P54999|RUXF_YEAST Small nuclear ribonucleoprotein F
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SMX3 PE=1 SV=1
Length = 86
Score = 42.4 bits (98), Expect = 0.001
Identities = 20/35 (57%), Positives = 22/35 (62%)
Frame = +2
Query: 5 EYKGLLVSADGYMNLQLANTEEIVDGSCTGNLGEV 109
EY+G LVS D Y NLQL EE V G G LGE+
Sbjct: 37 EYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEI 71
