miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q55CD9|NDH_DICDI Probable NADH dehydrogenase OS=Dictyostelium
discoideum GN=DDB_G0270104 PE=3 SV=2
Length = 451
Score = 57.8 bits (138), Expect = 2e-08
Identities = 26/51 (50%), Positives = 32/51 (62%)
Frame = +2
Query: 29 QLVVLGAGWGGFRCARXXXXXXXXXXXXSPRNHFLFTPLLPSTTVGTLEFR 181
+L++LG GWG + + SPRNHFLFTPLL S+ VGTLEFR
Sbjct: 41 KLIILGCGWGSYSFLKNLNSIKYDITVISPRNHFLFTPLLTSSAVGTLEFR 91
>sp|P40215|NDH1_YEAST External NADH-ubiquinone oxidoreductase 1,
mitochondrial OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NDE1 PE=1 SV=1
Length = 560
Score = 55.8 bits (133), Expect = 8e-08
Identities = 26/53 (49%), Positives = 32/53 (60%)
Frame = +2
Query: 23 RPQLVVLGAGWGGFRCARXXXXXXXXXXXXSPRNHFLFTPLLPSTTVGTLEFR 181
R LV+LG+GWG + SPRN+FLFTPLLPST VGT+E +
Sbjct: 112 RKTLVILGSGWGSVSLLKNLDTTLYNVVVVSPRNYFLFTPLLPSTPVGTIELK 164
>sp|O43090|NDH2_SCHPO Probable NADH-ubiquinone oxidoreductase
C947.15c, mitochondrial OS=Schizosaccharomyces pombe
(strain ATCC 38366 / 972) GN=SPBC947.15c PE=2 SV=1
Length = 551
Score = 53.5 bits (127), Expect = 4e-07
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +2
Query: 14 SGV-RPQLVVLGAGWGGFRCARXXXXXXXXXXXXSPRNHFLFTPLLPSTTVGTL 172
SGV + +VVLG+GWG + SPR+HFLFTP+LPS TVGTL
Sbjct: 86 SGVPKKNIVVLGSGWGAVAAIKNLDPSLYNITLVSPRDHFLFTPMLPSCTVGTL 139
>sp|Q07500|NDH2_YEAST External NADH-ubiquinone oxidoreductase 2,
mitochondrial OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NDE2 PE=1 SV=1
Length = 545
Score = 52.8 bits (125), Expect = 7e-07
Identities = 24/53 (45%), Positives = 31/53 (58%)
Frame = +2
Query: 23 RPQLVVLGAGWGGFRCARXXXXXXXXXXXXSPRNHFLFTPLLPSTTVGTLEFR 181
+ +LV+LG GWG + SPR+ FLFTPLLPST VGT+E +
Sbjct: 97 KKELVILGTGWGAISLLKKLDTSLYNVTVVSPRSFFLFTPLLPSTPVGTIEMK 149
>sp|P32340|NDI1_YEAST Rotenone-insensitive NADH-ubiquinone
oxidoreductase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NDI1 PE=1
SV=1
Length = 513
Score = 49.7 bits (117), Expect = 6e-06
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +2
Query: 23 RPQLVVLGAGWGGFRCARXXXXXXXXXXXXSPRNHFLFTPLLPSTTVGTLE 175
+P +++LG+GWG + SPR++FLFTPLLPS VGT++
Sbjct: 53 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVD 103
>sp|O14121|NDH1_SCHPO Probable NADH-ubiquinone oxidoreductase
C3A11.07, mitochondrial OS=Schizosaccharomyces pombe
(strain ATCC 38366 / 972) GN=SPAC3A11.07 PE=2 SV=1
Length = 551
Score = 49.3 bits (116), Expect = 7e-06
Identities = 25/50 (50%), Positives = 28/50 (56%)
Frame = +2
Query: 32 LVVLGAGWGGFRCARXXXXXXXXXXXXSPRNHFLFTPLLPSTTVGTLEFR 181
LVVLGAGWG R SPRN+FLFT LLPST G++ R
Sbjct: 94 LVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLLPSTATGSVHTR 143
