miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 99.6 bits (50), Expect = 8e-21
Identities = 81/91 (89%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcactaaaa----agtagttatcta 74
||||||||||||||||||||| |||| ||||||||||||||||| |||||| |||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttagatcactaaaatagtagtagtgatcta 64
Query: 75 aataatcttatatttgtttatggagggagta 105
||| ||||||||||| ||| |||||||||||
Sbjct: 65 aatgatcttatatttctttgtggagggagta 95
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 99.6 bits (50), Expect = 8e-21
Identities = 80/89 (89%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 17 agtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaa 76
||||||||||| ||||||||||| ||||||||||||| |||| ||||||||||||||||
Sbjct: 3 agtactccctcggtaaagaaatataagagcgtttagagcact--aaagtagttatctaaa 60
Query: 77 taatcttatatttgtttatggagggagta 105
| |||||||||| ||||| |||||||||
Sbjct: 61 tgctcttatatttctttatagagggagta 89
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 18 gtactccctctgtaaagaaataaaagagcgtttagatcacta 59
||||||||||| |||||||||| |||||| ||||||| ||||
Sbjct: 90 gtactccctctataaagaaatataagagcatttagataacta 49
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 97.6 bits (49), Expect = 3e-20
Identities = 79/88 (89%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 18 gtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaat 77
||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||
Sbjct: 4 gtactccttctgtaaagaaatataagagcgtctagatcact--aaagtagttatctaaac 61
Query: 78 aatcttatatttgtttatggagggagta 105
| |||||||||| |||| ||||||||||
Sbjct: 62 actcttatatttctttacggagggagta 89
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcacta 59
||||||||| ||||||||||| ||||| |||||||| ||||
Sbjct: 89 tactccctccgtaaagaaatataagagtgtttagataacta 49
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 77/88 (87%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 18 gtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaat 77
|||||||||| ||| ||||||| |||| ||||||||||||||| ||||||||||||||
Sbjct: 4 gtactccctccgtacagaaatataagaatgtttagatcactaaa--gtagttatctaaat 61
Query: 78 aatcttatatttgtttatggagggagta 105
||||||||||| |||| |||||||||
Sbjct: 62 gatcttatatttctttacagagggagta 89
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcacta 59
||||||||||||||||||||| |||| | ||||||| ||||
Sbjct: 89 tactccctctgtaaagaaatataagatcatttagataacta 49
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 77.8 bits (39), Expect = 3e-14
Identities = 78/90 (86%), Gaps = 2/90 (2%)
Strand = Plus / Minus
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaata 78
||||||||| ||||||||||| |||||| ||||||||||| |||||||| |||| |||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcact--aaagtagtgatctgaatg 32
Query: 79 atcttatatttgtttatggagggagtatct 108
||||||||| ||||| ||||||||||||
Sbjct: 31 ctcttatattagtttacagagggagtatct 2
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 77.8 bits (39), Expect = 3e-14
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 17 agtactccctctgtaaagaaataaaagagcgtttagatcacta 59
||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 85 agtactccctctgtaaagaaatataagagcgtttagatcacta 43
Score = 67.9 bits (34), Expect = 3e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatca 56
||||||||||||||||||||| ||||||||||||||||
Sbjct: 5 tactccctctgtaaagaaatataagagcgtttagatca 42
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 71.9 bits (36), Expect = 2e-12
Identities = 75/87 (86%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaata 78
||||||||||||||| |||| |||||| ||||||||||||||| |||| |||||||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaaa--tagtaatctaaacg 62
Query: 79 atcttatatttgtttatggagggagta 105
||||||||| ||||| ||||||||||
Sbjct: 63 ctcttatattagtttacggagggagta 89
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 67.9 bits (34), Expect = 3e-11
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 18 gtactccctctgtaaagaaataaaagagcgtttagatcacta 59
|||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 88 gtactccctctgtaaagaaatataagagtgtttagatcacta 47
Score = 48.1 bits (24), Expect = 3e-05
Identities = 51/59 (86%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 47 gtttagatcactaaaaagtagttatctaaataatcttatatttgtttatggagggagta 105
|||||||||||| |||||||| ||||||| | |||||||||| |||| |||||||||
Sbjct: 31 gtttagatcact--aaagtagtgatctaaacactcttatatttctttacagagggagta 87
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 65.9 bits (33), Expect = 1e-10
Identities = 75/88 (85%), Gaps = 2/88 (2%)
Strand = Plus / Minus
Query: 18 gtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaat 77
|||||||||||||||| |||| || | | ||||||||||| |||||||| |||||||
Sbjct: 90 gtactccctctgtaaactaatataaaaacatttagatcact--aaagtagtaatctaaac 33
Query: 78 aatcttatatttgtttatggagggagta 105
| ||||||||| ||||| ||||||||||
Sbjct: 32 actcttatattagtttacggagggagta 5
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 65.9 bits (33), Expect = 1e-10
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcactaaaa-agtagttatctaaat 77
|||||| || ||||||||||| |||||||| ||||||||||||| |||||| |||||||
Sbjct: 92 tactccatccgtaaagaaatacaagagcgtctagatcactaaaatagtagtgatctaaac 33
Query: 78 aatcttatatttgttta 94
|||||||||| ||||
Sbjct: 32 gttcttatatttcttta 16
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 29 gtaaagaaataaaagagcgtttagatcacta 59
||||||||||| |||| ||||||||||||||
Sbjct: 15 gtaaagaaatataagaacgtttagatcacta 45
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 65.9 bits (33), Expect = 1e-10
Identities = 66/76 (86%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaata 78
|||| |||||||||||||||| |||||||||||||||||| ||||||| |||||||
Sbjct: 5 tactacctctgtaaagaaatataagagcgtttagatcact--gaagtagtgatctaaacg 62
Query: 79 atcttatatttgttta 94
|||||||||| ||||
Sbjct: 63 ctcttatatttcttta 78
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 23 ccctctgtaaagaaataaaagagcgtttagatcacta 59
||||||||||||||||| |||||||||||||||||||
Sbjct: 85 ccctctgtaaagaaatataagagcgtttagatcacta 49
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 63.9 bits (32), Expect = 5e-10
Identities = 68/79 (86%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 16 tagtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaa 75
|||||||||||| ||||| |||| |||||||||||| ||||||||| |||| ||||||
Sbjct: 2 tagtactccctccgtaaactaatataagagcgtttaggtcactaaaa--tagtgatctaa 59
Query: 76 ataatcttatatttgttta 94
|| ||||||||| |||||
Sbjct: 60 atgctcttatattagttta 78
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 63.9 bits (32), Expect = 5e-10
Identities = 68/79 (86%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 16 tagtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaa 75
|||||||||||||||||| ||||| ||| ||||||||||| |||||| |||| ||||||
Sbjct: 2 tagtactccctctgtaaacaaatataagggcgtttagatctctaaaa--tagtgatctaa 59
Query: 76 ataatcttatatttgttta 94
| |||||||||| ||||
Sbjct: 60 acgctcttatatttcttta 78
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 17 agtactccctctgtaaagaaataaaagagcgtttagatcacta 59
|||| |||||| ||||||||||| |||||||||||||||||||
Sbjct: 91 agtagtccctcagtaaagaaatataagagcgtttagatcacta 49
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 63.9 bits (32), Expect = 5e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 16 tagtactccctctgtaaagaaataaaagagcgtttagatcacta 59
|||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 2 tagtactccctctgtaaactaatataagagcgtttagatcacta 45
Score = 48.1 bits (24), Expect = 3e-05
Identities = 72/87 (82%), Gaps = 2/87 (2%)
Strand = Plus / Minus
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaata 78
||||||||| ||||| |||| ||||||||||||| ||||||| |||| |||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaatactaaaa--tagtgatctaaacg 32
Query: 79 atcttatatttgtttatggagggagta 105
||||||||| ||||| |||||||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 61.9 bits (31), Expect = 2e-09
Identities = 73/86 (84%), Gaps = 2/86 (2%)
Strand = Plus / Minus
Query: 20 actccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaataa 79
|||||||| ||||| |||| |||||||||||||||||||||| |||| ||| ||| |
Sbjct: 88 actccctcagtaaactaatataagagcgtttagatcactaaaa--tagtgatcaaaacac 31
Query: 80 tcttatatttgtttatggagggagta 105
||||||||| |||| ||||||||||
Sbjct: 30 tcttatattaatttacggagggagta 5
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcactaaa 61
||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactaaa 47
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 61.9 bits (31), Expect = 2e-09
Identities = 70/82 (85%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaata 78
||||||||||||||| |||| |||||||||| ||||||||||| |||| |||||||
Sbjct: 5 tactccctctgtaaattaatataagagcgtttggatcactaaaa--tagtgatctaaacg 62
Query: 79 atcttatatttgtttatggagg 100
||||||||| ||||| |||||
Sbjct: 63 ctcttatattagtttacggagg 84
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 74/88 (84%), Gaps = 2/88 (2%)
Strand = Plus / Minus
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaata 78
||||||||||||||| |||| ||||||| |||||||||| |||||||| ||||||
Sbjct: 89 tactccctctgtaaactaatataagagcgcttagatcact--aaagtagtgatctaagcg 32
Query: 79 atcttatatttgtttatggagggagtat 106
||||||||| ||||| ||||||||||
Sbjct: 31 ctcttatattagtttacagagggagtat 4
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcacta 59
||||||||||||||| |||| ||||||| |||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcacta 45
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcacta 59
||||||||| ||||||||||| |||||||||||| ||||||
Sbjct: 5 tactccctccgtaaagaaatataagagcgtttaggtcacta 45
Score = 50.1 bits (25), Expect = 7e-06
Identities = 67/80 (83%), Gaps = 2/80 (2%)
Strand = Plus / Minus
Query: 29 gtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaataatcttatatt 88
||||| ||||| ||||||||| |||||||| || ||||| | ||||| |||||||||
Sbjct: 79 gtaaacaaatataagagcgttcagatcactcaa--gtagtgacctaaacgctcttatatt 22
Query: 89 tgtttatggagggagtatct 108
| |||| |||||||||||||
Sbjct: 21 tctttacggagggagtatct 2
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 74/88 (84%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 18 gtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaat 77
||||||||||| |||| |||| ||||| |||||||||||||||| |||| ||||||
Sbjct: 4 gtactccctctataaaccaatataagagtgtttagatcactaaaa--tagtgttctaaac 61
Query: 78 aatcttatatttgtttatggagggagta 105
||||||||| ||||| ||||||||||
Sbjct: 62 gctcttatattagtttacggagggagta 89
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 58.0 bits (29), Expect = 3e-08
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 17 agtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaa 76
|||| |||||||||||| |||| |||| | ||||||||||||| |||||| |||||||
Sbjct: 3 agtattccctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaa 62
Query: 77 taatcttatatttgtttatggagggagta 105
||||||||| ||||| |||||||||
Sbjct: 63 aggtcttatattagtttacagagggagta 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 18 gtactccctctgtaaagaaataaaagagcgtttagatcacta 59
|||||||||||||||| |||| |||| | ||||||||||||
Sbjct: 92 gtactccctctgtaaactaatataagaccttttagatcacta 51
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 58.0 bits (29), Expect = 3e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 17 agtactccctctgtaaagaaataaaagagcgtttagatcactaaa 61
||||||||||||||||| |||| |||||| ||||||||||||||
Sbjct: 3 agtactccctctgtaaactaatataagagcttttagatcactaaa 47
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 58.0 bits (29), Expect = 3e-08
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 15 ttagtactccctctgtaaagaaataaaagagcgtttagatcacta 59
||||||||||||||||||| |||| |||||| ||||||||||||
Sbjct: 92 ttagtactccctctgtaaactaatataagagcatttagatcacta 48
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 58.0 bits (29), Expect = 3e-08
Identities = 77/91 (84%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 15 ttagtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatcta 74
|||||||||| |||||||| |||| || ||| ||||||||||| ||||||| |||||
Sbjct: 1 ttagtactcc-tctgtaaactaatataaaagcatttagatcact---aagtagtgatcta 56
Query: 75 aataatcttatatttgtttatggagggagta 105
||| ||||||||| ||||| ||||||||||
Sbjct: 57 aatgctcttatattagtttacggagggagta 87
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 74/88 (84%), Gaps = 2/88 (2%)
Strand = Plus / Minus
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaata 78
|||||| |||||||| | || |||||||||||||||||| |||||||| |||||||
Sbjct: 89 tactccgtctgtaaactactataagagcgtttagatcact--aaagtagtaatctaaacg 32
Query: 79 atcttatatttgtttatggagggagtat 106
||||||||| |||| |||||||||||
Sbjct: 31 ctcttatattaatttacggagggagtat 4
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 17 agtactccctctgtaaagaaataaaagagcgtttagatcacta 59
||||||||||||||||| |||| ||||| |||||||||||||
Sbjct: 3 agtactccctctgtaaactaatataagagtgtttagatcacta 45
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 54.0 bits (27), Expect = 4e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 16 tagtactccctctgtaaagaaataaaagagcgtttagatcactaaaa 62
|||||||||||||||||| |||| ||||| |||||||| |||||||
Sbjct: 2 tagtactccctctgtaaactaatataagagtgtttagataactaaaa 48
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 25 ctctgtaaagaaataaaagagcgtttagatcacta 59
||||||||| ||||| |||||||||||||||||||
Sbjct: 11 ctctgtaaacaaatataagagcgtttagatcacta 45
Score = 50.1 bits (25), Expect = 7e-06
Identities = 55/64 (85%), Gaps = 2/64 (3%)
Strand = Plus / Minus
Query: 31 aaagaaataaaagagcgtttagatcactaaaaagtagttatctaaataatcttatatttg 90
||||||||| ||||| || ||||||||| |||||||| ||||||| |||||||||||
Sbjct: 77 aaagaaatataagagtgtctagatcact--aaagtagtgatctaaacgctcttatatttg 20
Query: 91 ttta 94
||||
Sbjct: 19 ttta 16
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcactaaa 61
||||||||||||||| |||| |||||||||||||| ||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagattactaaa 47
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 21 ctccctctgtaaagaaataaaagagcgtttagatcacta 59
||||||||||||||||||| |||| | ||||||||||||
Sbjct: 76 ctccctctgtaaagaaatataagatcatttagatcacta 38
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaataaaagagcgttta 51
||||||||||||||||||||| |||| ||||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgttta 37
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 74/89 (83%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 17 agtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaa 76
|||| |||||||||||| |||| |||| | ||||||||||| |||||||| |||||||
Sbjct: 3 agtattccctctgtaaactaatataagaccttttagatcact--aaagtagtgatctaaa 60
Query: 77 taatcttatatttgtttatggagggagta 105
||||||||| ||||| |||||||||
Sbjct: 61 aggtcttatattagtttacagagggagta 89
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 18 gtactccctctgtaaagaaataaaagagcgtttagatcacta 59
|||||||||||||||| |||| |||| | ||||||||||||
Sbjct: 90 gtactccctctgtaaactaatataagaccttttagatcacta 49
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcacta 59
|||||||||||| || ||||| ||||||||||||||||||
Sbjct: 5 tactccctctgtgaataaatatgagagcgtttagatcacta 45
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcacta 59
|||||||| |||||| |||| |||||||||||||||||||
Sbjct: 92 tactccctatgtaaaataatataagagcgtttagatcacta 52
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcacta 59
||||||||||||||| |||| |||| ||||||||||||||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcacta 49
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 50.1 bits (25), Expect = 7e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 62 aagtagttatctaaataatcttatatttgtttatggagggagtat 106
||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct: 46 aagtagtgttctaaatgctcttatattagtttatggagggagtat 90
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 23 ccctctgtaaagaaataaaagagcgtttagatcactaaaa 62
||||||||||| |||| |||||| |||||||||||||||
Sbjct: 9 ccctctgtaaactaatataagagcatttagatcactaaaa 48
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 17 agtactccctctgtaaagaaataaaagagcgttt 50
||||||||||||||||| |||| ||||||||||
Sbjct: 98 agtactccctctgtaaactaatataagagcgttt 65
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 70 atctaaataatcttatatttgtttatggagggagta 105
|||||||| ||||||||| ||||||||||||||||
Sbjct: 54 atctaaatgctcttatattagtttatggagggagta 89
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 17 agtactccctctgtaaagaaataaaagagcgtttag 52
||||||||||||||||| |||| ||||||||||||
Sbjct: 3 agtactccctctgtaaactaatataagagcgtttag 38
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 48.1 bits (24), Expect = 3e-05
Identities = 75/90 (83%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 16 tagtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaa 75
|||||||||||||||||| |||| || || |||||||| ||||||| |||| |||||
Sbjct: 2 tagtactccctctgtaaactaatataaaagtgtttagataactaaaa--tagt--tctaa 57
Query: 76 ataatcttatatttgtttatggagggagta 105
| ||||||||| ||||| ||||||||||
Sbjct: 58 acgctcttatattagtttacggagggagta 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 16 tagtactccctctgtaaagaaataaaagagcgtttaga 53
|||||||||||| ||||| |||| |||||||||||||
Sbjct: 90 tagtactccctccgtaaactaatataagagcgtttaga 53
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 64/77 (83%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 18 gtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaat 77
|||||||||||||||| |||| ||||| ||||||| ||||||| |||| |||||||
Sbjct: 4 gtactccctctgtaaactaatataagagtatttagattactaaaa--tagtgttctaaat 61
Query: 78 aatcttatatttgttta 94
||||||||| |||||
Sbjct: 62 gctcttatattagttta 78