miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
           (bread wheat)
          Length = 99

 Score = 99.6 bits (50), Expect = 8e-21
 Identities = 81/91 (89%), Gaps = 4/91 (4%)
 Strand = Plus / Plus

                                                                       
Query: 19  tactccctctgtaaagaaataaaagagcgtttagatcactaaaa----agtagttatcta 74
           ||||||||||||||||||||| |||| |||||||||||||||||    |||||| |||||
Sbjct: 5   tactccctctgtaaagaaatataagatcgtttagatcactaaaatagtagtagtgatcta 64

                                          
Query: 75  aataatcttatatttgtttatggagggagta 105
           ||| ||||||||||| ||| |||||||||||
Sbjct: 65  aatgatcttatatttctttgtggagggagta 95




>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum (bread
           wheat)
          Length = 93

 Score = 99.6 bits (50), Expect = 8e-21
 Identities = 80/89 (89%), Gaps = 2/89 (2%)
 Strand = Plus / Plus

                                                                       
Query: 17  agtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaa 76
           ||||||||||| ||||||||||| ||||||||||||| ||||  ||||||||||||||||
Sbjct: 3   agtactccctcggtaaagaaatataagagcgtttagagcact--aaagtagttatctaaa 60

                                        
Query: 77  taatcttatatttgtttatggagggagta 105
           |  |||||||||| ||||| |||||||||
Sbjct: 61  tgctcttatatttctttatagagggagta 89



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                    
Query: 18 gtactccctctgtaaagaaataaaagagcgtttagatcacta 59
          ||||||||||| |||||||||| |||||| ||||||| ||||
Sbjct: 90 gtactccctctataaagaaatataagagcatttagataacta 49




>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
          Length = 93

 Score = 97.6 bits (49), Expect = 3e-20
 Identities = 79/88 (89%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                       
Query: 18  gtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaat 77
           ||||||| |||||||||||||| |||||||| |||||||||  |||||||||||||||| 
Sbjct: 4   gtactccttctgtaaagaaatataagagcgtctagatcact--aaagtagttatctaaac 61

                                       
Query: 78  aatcttatatttgtttatggagggagta 105
           | |||||||||| |||| ||||||||||
Sbjct: 62  actcttatatttctttacggagggagta 89



 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                   
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcacta 59
          ||||||||| ||||||||||| ||||| |||||||| ||||
Sbjct: 89 tactccctccgtaaagaaatataagagtgtttagataacta 49




>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
          Length = 93

 Score = 81.8 bits (41), Expect = 2e-15
 Identities = 77/88 (87%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                       
Query: 18  gtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaat 77
           |||||||||| ||| ||||||| ||||  |||||||||||||||  ||||||||||||||
Sbjct: 4   gtactccctccgtacagaaatataagaatgtttagatcactaaa--gtagttatctaaat 61

                                       
Query: 78  aatcttatatttgtttatggagggagta 105
            ||||||||||| ||||  |||||||||
Sbjct: 62  gatcttatatttctttacagagggagta 89



 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                   
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcacta 59
          ||||||||||||||||||||| |||| | ||||||| ||||
Sbjct: 89 tactccctctgtaaagaaatataagatcatttagataacta 49




>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum (bread
           wheat)
          Length = 93

 Score = 77.8 bits (39), Expect = 3e-14
 Identities = 78/90 (86%), Gaps = 2/90 (2%)
 Strand = Plus / Minus

                                                                       
Query: 19  tactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaata 78
           ||||||||| ||||||||||| |||||| |||||||||||  |||||||| |||| ||| 
Sbjct: 89  tactccctccgtaaagaaatataagagcatttagatcact--aaagtagtgatctgaatg 32

                                         
Query: 79  atcttatatttgtttatggagggagtatct 108
            ||||||||| |||||  ||||||||||||
Sbjct: 31  ctcttatattagtttacagagggagtatct 2




>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
          Length = 87

 Score = 77.8 bits (39), Expect = 3e-14
 Identities = 42/43 (97%)
 Strand = Plus / Minus

                                                     
Query: 17 agtactccctctgtaaagaaataaaagagcgtttagatcacta 59
          ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 85 agtactccctctgtaaagaaatataagagcgtttagatcacta 43



 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatca 56
          ||||||||||||||||||||| ||||||||||||||||
Sbjct: 5  tactccctctgtaaagaaatataagagcgtttagatca 42




>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum (bread
           wheat)
          Length = 93

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 75/87 (86%), Gaps = 2/87 (2%)
 Strand = Plus / Plus

                                                                       
Query: 19  tactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaata 78
           |||||||||||||||  |||| |||||| |||||||||||||||  |||| |||||||  
Sbjct: 5   tactccctctgtaaactaatataagagcatttagatcactaaaa--tagtaatctaaacg 62

                                      
Query: 79  atcttatatttgtttatggagggagta 105
            ||||||||| ||||| ||||||||||
Sbjct: 63  ctcttatattagtttacggagggagta 89




>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
          Length = 91

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                    
Query: 18 gtactccctctgtaaagaaataaaagagcgtttagatcacta 59
          |||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 88 gtactccctctgtaaagaaatataagagtgtttagatcacta 47



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 51/59 (86%), Gaps = 2/59 (3%)
 Strand = Plus / Plus

                                                                      
Query: 47  gtttagatcactaaaaagtagttatctaaataatcttatatttgtttatggagggagta 105
           ||||||||||||  |||||||| ||||||| | |||||||||| ||||  |||||||||
Sbjct: 31  gtttagatcact--aaagtagtgatctaaacactcttatatttctttacagagggagta 87




>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
          Length = 93

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 75/88 (85%), Gaps = 2/88 (2%)
 Strand = Plus / Minus

                                                                       
Query: 18  gtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaat 77
           ||||||||||||||||  |||| || | | |||||||||||  |||||||| ||||||| 
Sbjct: 90  gtactccctctgtaaactaatataaaaacatttagatcact--aaagtagtaatctaaac 33

                                       
Query: 78  aatcttatatttgtttatggagggagta 105
           | ||||||||| ||||| ||||||||||
Sbjct: 32  actcttatattagtttacggagggagta 5




>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
          subsp. dicoccoides
          Length = 96

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 67/77 (87%), Gaps = 1/77 (1%)
 Strand = Plus / Minus

                                                                      
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcactaaaa-agtagttatctaaat 77
          |||||| || ||||||||||| |||||||| ||||||||||||| |||||| ||||||| 
Sbjct: 92 tactccatccgtaaagaaatacaagagcgtctagatcactaaaatagtagtgatctaaac 33

                           
Query: 78 aatcttatatttgttta 94
            |||||||||| ||||
Sbjct: 32 gttcttatatttcttta 16



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 29 gtaaagaaataaaagagcgtttagatcacta 59
          ||||||||||| |||| ||||||||||||||
Sbjct: 15 gtaaagaaatataagaacgtttagatcacta 45




>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
          Length = 93

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 66/76 (86%), Gaps = 2/76 (2%)
 Strand = Plus / Plus

                                                                      
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaata 78
          |||| |||||||||||||||| ||||||||||||||||||   ||||||| |||||||  
Sbjct: 5  tactacctctgtaaagaaatataagagcgtttagatcact--gaagtagtgatctaaacg 62

                          
Query: 79 atcttatatttgttta 94
           |||||||||| ||||
Sbjct: 63 ctcttatatttcttta 78



 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                               
Query: 23 ccctctgtaaagaaataaaagagcgtttagatcacta 59
          ||||||||||||||||| |||||||||||||||||||
Sbjct: 85 ccctctgtaaagaaatataagagcgtttagatcacta 49




>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
          (bread wheat)
          Length = 93

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 68/79 (86%), Gaps = 2/79 (2%)
 Strand = Plus / Plus

                                                                      
Query: 16 tagtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaa 75
          |||||||||||| |||||  |||| |||||||||||| |||||||||  |||| ||||||
Sbjct: 2  tagtactccctccgtaaactaatataagagcgtttaggtcactaaaa--tagtgatctaa 59

                             
Query: 76 ataatcttatatttgttta 94
          ||  ||||||||| |||||
Sbjct: 60 atgctcttatattagttta 78




>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
          Length = 93

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 68/79 (86%), Gaps = 2/79 (2%)
 Strand = Plus / Plus

                                                                      
Query: 16 tagtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaa 75
          |||||||||||||||||| ||||| ||| ||||||||||| ||||||  |||| ||||||
Sbjct: 2  tagtactccctctgtaaacaaatataagggcgtttagatctctaaaa--tagtgatctaa 59

                             
Query: 76 ataatcttatatttgttta 94
          |   |||||||||| ||||
Sbjct: 60 acgctcttatatttcttta 78



 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                     
Query: 17 agtactccctctgtaaagaaataaaagagcgtttagatcacta 59
          |||| |||||| ||||||||||| |||||||||||||||||||
Sbjct: 91 agtagtccctcagtaaagaaatataagagcgtttagatcacta 49




>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
          Length = 93

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                      
Query: 16 tagtactccctctgtaaagaaataaaagagcgtttagatcacta 59
          ||||||||||||||||||  |||| |||||||||||||||||||
Sbjct: 2  tagtactccctctgtaaactaatataagagcgtttagatcacta 45



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 72/87 (82%), Gaps = 2/87 (2%)
 Strand = Plus / Minus

                                                                       
Query: 19  tactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaata 78
           ||||||||| |||||  |||| |||||||||||||  |||||||  |||| |||||||  
Sbjct: 89  tactccctccgtaaactaatataagagcgtttagaatactaaaa--tagtgatctaaacg 32

                                      
Query: 79  atcttatatttgtttatggagggagta 105
            ||||||||| |||||  |||||||||
Sbjct: 31  ctcttatattagtttacagagggagta 5




>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
          Length = 93

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 73/86 (84%), Gaps = 2/86 (2%)
 Strand = Plus / Minus

                                                                       
Query: 20  actccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaataa 79
           |||||||| |||||  |||| ||||||||||||||||||||||  |||| ||| ||| | 
Sbjct: 88  actccctcagtaaactaatataagagcgtttagatcactaaaa--tagtgatcaaaacac 31

                                     
Query: 80  tcttatatttgtttatggagggagta 105
           |||||||||  |||| ||||||||||
Sbjct: 30  tcttatattaatttacggagggagta 5




>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
          Length = 92

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                     
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcactaaa 61
          |||||||||||||||  |||| |||||||||||||||||||||
Sbjct: 5  tactccctctgtaaactaatataagagcgtttagatcactaaa 47




>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
          Length = 93

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 70/82 (85%), Gaps = 2/82 (2%)
 Strand = Plus / Plus

                                                                       
Query: 19  tactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaata 78
           |||||||||||||||  |||| |||||||||| |||||||||||  |||| |||||||  
Sbjct: 5   tactccctctgtaaattaatataagagcgtttggatcactaaaa--tagtgatctaaacg 62

                                 
Query: 79  atcttatatttgtttatggagg 100
            ||||||||| ||||| |||||
Sbjct: 63  ctcttatattagtttacggagg 84




>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
           (bread wheat)
          Length = 93

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 74/88 (84%), Gaps = 2/88 (2%)
 Strand = Plus / Minus

                                                                       
Query: 19  tactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaata 78
           |||||||||||||||  |||| ||||||| ||||||||||  |||||||| ||||||   
Sbjct: 89  tactccctctgtaaactaatataagagcgcttagatcact--aaagtagtgatctaagcg 32

                                       
Query: 79  atcttatatttgtttatggagggagtat 106
            ||||||||| |||||  ||||||||||
Sbjct: 31  ctcttatattagtttacagagggagtat 4



 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                   
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcacta 59
          |||||||||||||||  |||| ||||||| |||||||||||
Sbjct: 5  tactccctctgtaaactaatataagagcgcttagatcacta 45




>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
          (bread wheat)
          Length = 92

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                   
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcacta 59
          ||||||||| ||||||||||| |||||||||||| ||||||
Sbjct: 5  tactccctccgtaaagaaatataagagcgtttaggtcacta 45



 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 67/80 (83%), Gaps = 2/80 (2%)
 Strand = Plus / Minus

                                                                       
Query: 29  gtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaataatcttatatt 88
           ||||| ||||| ||||||||| |||||||| ||  ||||| | |||||   |||||||||
Sbjct: 79  gtaaacaaatataagagcgttcagatcactcaa--gtagtgacctaaacgctcttatatt 22

                               
Query: 89  tgtttatggagggagtatct 108
           | |||| |||||||||||||
Sbjct: 21  tctttacggagggagtatct 2




>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
          Length = 93

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 74/88 (84%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                       
Query: 18  gtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaat 77
           ||||||||||| ||||  |||| ||||| ||||||||||||||||  ||||  |||||| 
Sbjct: 4   gtactccctctataaaccaatataagagtgtttagatcactaaaa--tagtgttctaaac 61

                                       
Query: 78  aatcttatatttgtttatggagggagta 105
             ||||||||| ||||| ||||||||||
Sbjct: 62  gctcttatattagtttacggagggagta 89




>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
           dicoccoides
          Length = 95

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 74/89 (83%)
 Strand = Plus / Plus

                                                                       
Query: 17  agtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaa 76
           |||| ||||||||||||  |||| |||| | |||||||||||||  |||||| |||||||
Sbjct: 3   agtattccctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaa 62

                                        
Query: 77  taatcttatatttgtttatggagggagta 105
              ||||||||| |||||  |||||||||
Sbjct: 63  aggtcttatattagtttacagagggagta 91



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                    
Query: 18 gtactccctctgtaaagaaataaaagagcgtttagatcacta 59
          ||||||||||||||||  |||| |||| | ||||||||||||
Sbjct: 92 gtactccctctgtaaactaatataagaccttttagatcacta 51




>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
          Length = 100

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                       
Query: 17 agtactccctctgtaaagaaataaaagagcgtttagatcactaaa 61
          |||||||||||||||||  |||| |||||| ||||||||||||||
Sbjct: 3  agtactccctctgtaaactaatataagagcttttagatcactaaa 47




>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
          Length = 92

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                       
Query: 15 ttagtactccctctgtaaagaaataaaagagcgtttagatcacta 59
          |||||||||||||||||||  |||| |||||| ||||||||||||
Sbjct: 92 ttagtactccctctgtaaactaatataagagcatttagatcacta 48




>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
          Length = 91

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 77/91 (84%), Gaps = 4/91 (4%)
 Strand = Plus / Plus

                                                                       
Query: 15  ttagtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatcta 74
           |||||||||| ||||||||  |||| || ||| |||||||||||   ||||||| |||||
Sbjct: 1   ttagtactcc-tctgtaaactaatataaaagcatttagatcact---aagtagtgatcta 56

                                          
Query: 75  aataatcttatatttgtttatggagggagta 105
           |||  ||||||||| ||||| ||||||||||
Sbjct: 57  aatgctcttatattagtttacggagggagta 87




>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
          Length = 93

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 74/88 (84%), Gaps = 2/88 (2%)
 Strand = Plus / Minus

                                                                       
Query: 19  tactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaata 78
           |||||| ||||||||  | || ||||||||||||||||||  |||||||| |||||||  
Sbjct: 89  tactccgtctgtaaactactataagagcgtttagatcact--aaagtagtaatctaaacg 32

                                       
Query: 79  atcttatatttgtttatggagggagtat 106
            |||||||||  |||| |||||||||||
Sbjct: 31  ctcttatattaatttacggagggagtat 4




>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
          subsp. dicoccoides
          Length = 93

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                     
Query: 17 agtactccctctgtaaagaaataaaagagcgtttagatcacta 59
          |||||||||||||||||  |||| ||||| |||||||||||||
Sbjct: 3  agtactccctctgtaaactaatataagagtgtttagatcacta 45




>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
          (bread wheat)
          Length = 91

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                         
Query: 16 tagtactccctctgtaaagaaataaaagagcgtttagatcactaaaa 62
          ||||||||||||||||||  |||| ||||| |||||||| |||||||
Sbjct: 2  tagtactccctctgtaaactaatataagagtgtttagataactaaaa 48




>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
          Length = 93

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 25 ctctgtaaagaaataaaagagcgtttagatcacta 59
          ||||||||| ||||| |||||||||||||||||||
Sbjct: 11 ctctgtaaacaaatataagagcgtttagatcacta 45



 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 55/64 (85%), Gaps = 2/64 (3%)
 Strand = Plus / Minus

                                                                      
Query: 31 aaagaaataaaagagcgtttagatcactaaaaagtagttatctaaataatcttatatttg 90
          ||||||||| ||||| || |||||||||  |||||||| |||||||   |||||||||||
Sbjct: 77 aaagaaatataagagtgtctagatcact--aaagtagtgatctaaacgctcttatatttg 20

              
Query: 91 ttta 94
          ||||
Sbjct: 19 ttta 16




>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
          Length = 93

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                     
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcactaaa 61
          |||||||||||||||  |||| |||||||||||||| ||||||
Sbjct: 5  tactccctctgtaaactaatataagagcgtttagattactaaa 47




>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
          subsp. vulgare (domesticated barley)
          Length = 82

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                 
Query: 21 ctccctctgtaaagaaataaaagagcgtttagatcacta 59
          ||||||||||||||||||| |||| | ||||||||||||
Sbjct: 76 ctccctctgtaaagaaatataagatcatttagatcacta 38



 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 19 tactccctctgtaaagaaataaaagagcgttta 51
          ||||||||||||||||||||| |||| ||||||
Sbjct: 5  tactccctctgtaaagaaatataagatcgttta 37




>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
          Length = 93

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 74/89 (83%), Gaps = 2/89 (2%)
 Strand = Plus / Plus

                                                                       
Query: 17  agtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaa 76
           |||| ||||||||||||  |||| |||| | |||||||||||  |||||||| |||||||
Sbjct: 3   agtattccctctgtaaactaatataagaccttttagatcact--aaagtagtgatctaaa 60

                                        
Query: 77  taatcttatatttgtttatggagggagta 105
              ||||||||| |||||  |||||||||
Sbjct: 61  aggtcttatattagtttacagagggagta 89



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                    
Query: 18 gtactccctctgtaaagaaataaaagagcgtttagatcacta 59
          ||||||||||||||||  |||| |||| | ||||||||||||
Sbjct: 90 gtactccctctgtaaactaatataagaccttttagatcacta 49




>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
          (bread wheat)
          Length = 96

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                   
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcacta 59
          |||||||||||| || |||||  ||||||||||||||||||
Sbjct: 5  tactccctctgtgaataaatatgagagcgtttagatcacta 45



 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                   
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcacta 59
          |||||||| ||||||  |||| |||||||||||||||||||
Sbjct: 92 tactccctatgtaaaataatataagagcgtttagatcacta 52




>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
          (bread wheat)
          Length = 93

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                   
Query: 19 tactccctctgtaaagaaataaaagagcgtttagatcacta 59
          |||||||||||||||  |||| |||| ||||||||||||||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcacta 49




>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 93

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 62  aagtagttatctaaataatcttatatttgtttatggagggagtat 106
           |||||||  |||||||  ||||||||| |||||||||||||||||
Sbjct: 46  aagtagtgttctaaatgctcttatattagtttatggagggagtat 90




>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
          Length = 100

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                  
Query: 23 ccctctgtaaagaaataaaagagcgtttagatcactaaaa 62
          |||||||||||  |||| |||||| |||||||||||||||
Sbjct: 9  ccctctgtaaactaatataagagcatttagatcactaaaa 48



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                            
Query: 17 agtactccctctgtaaagaaataaaagagcgttt 50
          |||||||||||||||||  |||| ||||||||||
Sbjct: 98 agtactccctctgtaaactaatataagagcgttt 65




>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
          Length = 93

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 70  atctaaataatcttatatttgtttatggagggagta 105
           ||||||||  ||||||||| ||||||||||||||||
Sbjct: 54  atctaaatgctcttatattagtttatggagggagta 89




>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 138

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 17 agtactccctctgtaaagaaataaaagagcgtttag 52
          |||||||||||||||||  |||| ||||||||||||
Sbjct: 3  agtactccctctgtaaactaatataagagcgtttag 38




>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
          Length = 91

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 75/90 (83%), Gaps = 4/90 (4%)
 Strand = Plus / Plus

                                                                       
Query: 16  tagtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaa 75
           ||||||||||||||||||  |||| || || |||||||| |||||||  ||||  |||||
Sbjct: 2   tagtactccctctgtaaactaatataaaagtgtttagataactaaaa--tagt--tctaa 57

                                         
Query: 76  ataatcttatatttgtttatggagggagta 105
           |   ||||||||| ||||| ||||||||||
Sbjct: 58  acgctcttatattagtttacggagggagta 87



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                
Query: 16 tagtactccctctgtaaagaaataaaagagcgtttaga 53
          |||||||||||| |||||  |||| |||||||||||||
Sbjct: 90 tagtactccctccgtaaactaatataagagcgtttaga 53




>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
          subsp. vulgare (domesticated barley)
          Length = 93

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 64/77 (83%), Gaps = 2/77 (2%)
 Strand = Plus / Plus

                                                                      
Query: 18 gtactccctctgtaaagaaataaaagagcgtttagatcactaaaaagtagttatctaaat 77
          ||||||||||||||||  |||| |||||  ||||||| |||||||  ||||  |||||||
Sbjct: 4  gtactccctctgtaaactaatataagagtatttagattactaaaa--tagtgttctaaat 61

                           
Query: 78 aatcttatatttgttta 94
            ||||||||| |||||
Sbjct: 62 gctcttatattagttta 78