miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 87.7 bits (44), Expect = 3e-17
Identities = 75/84 (89%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 17 agtactccctctgtaaagaaacataagagcgtt-agatcaagaaagtagtgatttaaatg 75
||||||||||| ||||||||| ||||||||||| ||| || |||||||| || ||||||
Sbjct: 3 agtactccctcggtaaagaaatataagagcgtttagagcactaaagtagttatctaaatg 62
Query: 76 ctcttatatttctttatggaggga 99
||||||||||||||||| ||||||
Sbjct: 63 ctcttatatttctttatagaggga 86
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 77.8 bits (39), Expect = 3e-14
Identities = 73/83 (87%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 18 gtactccctctgtaaagaaacataagagcgt-tagatcaagaaagtagtgatttaaatgc 76
||||||| |||||||||||| |||||||||| ||||||| |||||||| || |||| |
Sbjct: 4 gtactccttctgtaaagaaatataagagcgtctagatcactaaagtagttatctaaacac 63
Query: 77 tcttatatttctttatggaggga 99
||||||||||||||| |||||||
Sbjct: 64 tcttatatttctttacggaggga 86
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaacataagagcgtt-agatcaagaaagtagtgatttaaatgct 77
|||| |||||||||||||| ||||||||||| |||||| |||||||||| |||| |||
Sbjct: 5 tactacctctgtaaagaaatataagagcgtttagatcactgaagtagtgatctaaacgct 64
Query: 78 cttatatttcttta 91
||||||||||||||
Sbjct: 65 cttatatttcttta 78
Score = 52.0 bits (26), Expect = 2e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 23 ccctctgtaaagaaacataagagcg-ttagatcaagaaagtagtgatttaaatgctctta 81
||||||||||||||| ||||||||| |||||||| | |||||| |||| |||||||
Sbjct: 85 ccctctgtaaagaaatataagagcgtttagatcactacttcagtgatctaaacgctctta 26
Query: 82 tatttcttta 91
||||||||||
Sbjct: 25 tatttcttta 16
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 73.8 bits (37), Expect = 5e-13
Identities = 77/89 (86%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 16 tagtactccctctgtaaagaaacataagagcgtt-agatcaagaaagtagtgatttaaat 74
|||||||||||||||||| ||| ||||| ||||| ||||| ||| ||||||| ||||
Sbjct: 2 tagtactccctctgtaaacaaatataagggcgtttagatctctaaaatagtgatctaaac 61
Query: 75 gctcttatatttctttatggagggactac 103
||||||||||||||||| ||||||||||
Sbjct: 62 gctcttatatttctttactgagggactac 90
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 63.9 bits (32), Expect = 4e-10
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 19 tactccctctgtaaagaaacataagagcgtt-agatcaagaaagtagtgatttaaatgct 77
||||||||| ||||||||| |||||||| || |||||| ||||||||||| | ||||||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgct 30
Query: 78 cttatatt 85
||||||||
Sbjct: 29 cttatatt 22
Score = 60.0 bits (30), Expect = 7e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 62 tagtgatttaaatgctcttatatttctttatggaggga 99
||||||| |||||||||||||||||||||| |||||||
Sbjct: 49 tagtgatctaaatgctcttatatttctttacggaggga 86
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 63.9 bits (32), Expect = 4e-10
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaacataagagcgtt-agatcaagaaagtagtgatttaaatgct 77
||||||||||||||| || ||||||||||| |||||| ||||||||||| |||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgct 64
Query: 78 cttatatt 85
||||||||
Sbjct: 65 cttatatt 72
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 61.9 bits (31), Expect = 2e-09
Identities = 64/74 (86%), Gaps = 7/74 (9%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaacataagagcg-ttagatcaagaaagtagtgatttaaatgct 77
||||||||||||||||||| ||||||||| |||||||| ||||||| |||| |||
Sbjct: 5 tactccctctgtaaagaaatataagagcgtttagatca------tagtgatctaaacgct 58
Query: 78 cttatatttcttta 91
||||||||||||||
Sbjct: 59 cttatatttcttta 72
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 17 agtactccctctgtaaagaaacataagagcgtt 49
||||||||||||||||||||| |||||||||||
Sbjct: 85 agtactccctctgtaaagaaatataagagcgtt 53
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 58.0 bits (29), Expect = 3e-08
Identities = 74/88 (84%), Gaps = 7/88 (7%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaacataagagcgtt-agatcaagaaa------gtagtgattta 71
||||||||||||||||||| |||||| |||| |||||| ||| |||||||| ||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttagatcactaaaatagtagtagtgatcta 64
Query: 72 aatgctcttatatttctttatggaggga 99
|||| |||||||||||||| ||||||||
Sbjct: 65 aatgatcttatatttctttgtggaggga 92
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 56.0 bits (28), Expect = 1e-07
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 19 tactccctctgtaaagaaacataagagcg-ttagatcaagaaagtagtgatttaaatgct 77
||||||||||||||| || ||||||||| |||||||| ||||||||||| ||| |||
Sbjct: 89 tactccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgct 30
Query: 78 cttatatt 85
||||||||
Sbjct: 29 cttatatt 22
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 56.0 bits (28), Expect = 1e-07
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 29 gtaaagaaacataagagcgtt-agatcaagaaagtagtgatttaaatgctcttatatttc 87
||||| ||| ||||||||||| |||||| ||||||||| |||| |||||||||||||
Sbjct: 79 gtaaacaaatataagagcgttcagatcactcaagtagtgacctaaacgctcttatatttc 20
Query: 88 tttatggaggga 99
|||| |||||||
Sbjct: 19 tttacggaggga 8
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaacataagagcgtt 49
||||||||| ||||||||| |||||||||||
Sbjct: 5 tactccctccgtaaagaaatataagagcgtt 35
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 16 tagtactccctctgtaaagaaacataagagcgtt-agatcaagaaagtagtgatttaaat 74
|||||||||||| ||||| || ||||||||||| || ||| ||| ||||||| |||||
Sbjct: 2 tagtactccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaat 61
Query: 75 gctcttatatt 85
|||||||||||
Sbjct: 62 gctcttatatt 72
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 18 gtactccctctgtaaagaaacataagagcgtt-agatcaagaaagtagtgatttaaatgc 76
|||||||||| ||| ||||| |||||| ||| |||||| |||||||| || ||||||
Sbjct: 4 gtactccctccgtacagaaatataagaatgtttagatcactaaagtagttatctaaatga 63
Query: 77 tcttatatttcttta 91
|||||||||||||||
Sbjct: 64 tcttatatttcttta 78
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 19 tactccctctgtaaagaaacataaga 44
||||||||||||||||||| ||||||
Sbjct: 89 tactccctctgtaaagaaatataaga 64
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 31 aaagaaacataagagcgt-tagatcaagaaagtagtgatttaaatgctcttatatttctt 89
||||||| ||||||| || ||||||| ||||||||||| |||| |||||||||||| ||
Sbjct: 77 aaagaaatataagagtgtctagatcactaaagtagtgatctaaacgctcttatatttgtt 18
Query: 90 ta 91
||
Sbjct: 17 ta 16
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 52.0 bits (26), Expect = 2e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 48 ttagatcaagaaagtagtgatttaaatgctcttatatttctttatggagggactacca 105
|||||||| ||||||||||| |||| |||||||||||||||| |||||| |||||
Sbjct: 33 ttagatcactaaagtagtgatctaaacactcttatatttctttacagagggagtacca 90
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 18 gtactccctctgtaaagaaacataagag 45
|||||||||||||||||||| |||||||
Sbjct: 88 gtactccctctgtaaagaaatataagag 61
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 59 aagtagtgatttaaatgctcttatatttctttatggaggga 99
|||||||| | |||||||||||||||| ||||||||||||
Sbjct: 46 aagtagtgttctaaatgctcttatattagtttatggaggga 86
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 59 aagtagtgatttaaatgctcttatatttctttatggaggga 99
|||||||||| |||||||||||||||| |||| |||||||
Sbjct: 44 aagtagtgatctaaatgctcttatattagtttacggaggga 84
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 48.1 bits (24), Expect = 3e-05
Identities = 58/68 (85%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaacataagagcg-ttagatcaagaaagtagtgatttaaatgct 77
||||||||||||||| || ||||||||| |||||| | ||||||||| | ||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatgct 64
Query: 78 cttatatt 85
|||||||
Sbjct: 65 tttatatt 72
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 48.1 bits (24), Expect = 3e-05
Identities = 58/68 (85%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaacataagagcg-ttagatcaagaaagtagtgatttaaatgct 77
||||||||||||||| || ||||||||| || ||||| ||| ||||||| |||| |||
Sbjct: 5 tactccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgct 64
Query: 78 cttatatt 85
||||||||
Sbjct: 65 cttatatt 72
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaacataagagcgtt 49
||||||||||||||||||| |||||| ||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtt 35
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 tagtgatttaaatgctcttatatttcttta 91
||||||| |||||| |||||||||||||||
Sbjct: 38 tagtgatctaaatgatcttatatttcttta 67
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 70 taaatgctcttatatttctttatggagggactacc 104
|||||||||||||||| |||||||||||| ||||
Sbjct: 57 taaatgctcttatattagtttatggagggagtacc 91
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 aagtagtgatttaaatgctcttatatt 85
|||||||||| ||||||||||||||||
Sbjct: 45 aagtagtgatctaaatgctcttatatt 71
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 68/82 (82%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaacataagagc-gttagatcaagaaagtagtgatttaaatgct 77
||||||||||||||| || |||||||| |||||||| ||| |||| || |||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgct 64
Query: 78 cttatatttctttatggaggga 99
|||||||| |||| |||||||
Sbjct: 65 cttatattagtttacggaggga 86
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 50/58 (86%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 17 agtactccctctgtaaagaaacataagagc-gttagatcaagaaagtagtgatttaaa 73
||||||||||||||||| || |||||||| |||||||| ||||||||||| ||||
Sbjct: 3 agtactccctctgtaaactaatataagagcttttagatcactaaagtagtgatctaaa 60
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 16 tagtactccctctgtaaagaaacataagagcgtt 49
|||||||||||||||||| || |||||||||||
Sbjct: 2 tagtactccctctgtaaactaatataagagcgtt 35
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 53/62 (85%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 39 ataagagcgtt-agatcaagaaagtagtgatttaaatgctcttatatttctttatggagg 97
||||||||||| |||||| |||||||| || |||| ||||||||||| |||| |||||
Sbjct: 69 ataagagcgtttagatcactaaagtagtaatctaaacgctcttatattaatttacggagg 10
Query: 98 ga 99
||
Sbjct: 9 ga 8
