miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 73.8 bits (37), Expect = 5e-13
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 1 cggagtcagcaagcttgagacagcaactgcacaacttgcaagaaagtca 49
||||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 159 cggaggcagcaagcttgaggcaacaactgcacaacttgcaagaaagtca 111
Score = 60.0 bits (30), Expect = 7e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 81 ccttgaaagtaatgcagttgttgcctcatgcttggtgccacc 122
||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 49 ccttgcaagtaatgcagttgtaacctcatgcttggtgccacc 8
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 2 ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaa 45
|||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 121 ggaggcagcaagcttgagacaacaactgcacaacttgcaagaaa 78
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 2 ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaa 45
|||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 123 ggaggcagcaagcttgagacaacaactgcacaacttgcaagaaa 80
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 7 cagcaagcttgagacagcaactgcacaacttgcaagaaa 45
||||||||| ||| ||||||||||| | |||||||||||
Sbjct: 13 cagcaagctagaggcagcaactgcataccttgcaagaaa 51
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 2 ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaag 46
|||| ||||||||||||| || |||||||||||||||||||||||
Sbjct: 160 ggaggcagcaagcttgaggcaacaactgcacaacttgcaagaaag 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 72 ttgtaacttccttgaaagtaatgcagttgttgcctcatgcttggtgccacc 122
|||| |||| |||| ||||||||||||| || || |||||||||||||||
Sbjct: 58 ttgtgactttcttgcaagtaatgcagttcctgactaatgcttggtgccacc 8
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 2 ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaag 46
|||| ||||||||||||| |||||||||||| |||||||||||||
Sbjct: 166 ggaggcagcaagcttgaggcagcaactgcacgacttgcaagaaag 122
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 87 aagtaatgcagttgttgcctcatgcttggtgcc 119
||||| |||||||||||||||||||||||||||
Sbjct: 43 aagtactgcagttgttgcctcatgcttggtgcc 11
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 63.9 bits (32), Expect = 5e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 7 cagcaagcttgagacagcaactgcacaacttgcaagaaag 46
||||||||||||| || |||||||||||||||||||||||
Sbjct: 227 cagcaagcttgaggcaacaactgcacaacttgcaagaaag 188
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 72 ttgtaacttccttgaaagtaatgcagttgttgcctcatgcttggtgcc 119
|||| |||| |||| ||||||||||||| ||||||||||||||||||
Sbjct: 48 ttgtgactttcttgcaagtaatgcagttcctgcctcatgcttggtgcc 1
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 63.9 bits (32), Expect = 5e-10
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 2 ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaa 45
|||| |||||||||||||||| |||||||||| |||||||||||
Sbjct: 121 ggaggcagcaagcttgagacaacaactgcacagcttgcaagaaa 78
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 9 gcaagcttgagacagcaactgcacaacttgcaagaaa 45
||||||| ||||||||||||||| | |||||||||||
Sbjct: 15 gcaagctagagacagcaactgcatatcttgcaagaaa 51
>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 61.9 bits (31), Expect = 2e-09
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 72 ttgtaacttccttgaaagtaatgcagttgttgcctcatgcttggtgccacc 122
|||| |||| |||| ||||||||||||| |||||||||||||||||||||
Sbjct: 58 ttgtgactttcttgcaagtaatgcagttcctgcctcatgcttggtgccacc 8
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 2 ggagtcagcaagcttgagacagcaactgcacaacttgcaagaa 44
|||| ||||||||||||| ||||||||||| ||||||||||||
Sbjct: 122 ggaggcagcaagcttgaggcagcaactgcataacttgcaagaa 80
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 2 ggagtcagcaagcttgagacagcaactgcacaacttgc 39
|||| ||||||||||||| ||||||||||| |||||||
Sbjct: 127 ggaggcagcaagcttgaggcagcaactgcataacttgc 90
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 2 ggagtcagcaagcttgagacagcaactgcacaacttgcaaga 43
|||| ||| ||||||||| ||||||||||| |||||||||||
Sbjct: 122 ggaggcaggaagcttgaggcagcaactgcataacttgcaaga 81
