miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
          Length = 187

 Score =  113 bits (57), Expect = 1e-24
 Identities = 119/138 (86%), Gaps = 5/138 (3%)
 Strand = Plus / Plus

                                                                       
Query: 66  cagctgcttgttcatggttcccactatcctatctccattagaacacgaggagataggctt 125
           ||||||||||||||||||||||||||| ||||||| ||  ||| |    |||||||||||
Sbjct: 53  cagctgcttgttcatggttcccactattctatctc-ataggaaaa----gagataggctt 107

                                                                       
Query: 126 gtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtttggattgaagg 185
           ||||||||||||| | ||||||||  || |  ||| ||||||| || |||||||||||||
Sbjct: 108 gtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctttggattgaagg 167

                             
Query: 186 gagctctgcatcttgatc 203
           ||||||||||||||||||
Sbjct: 168 gagctctgcatcttgatc 185




>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
          Length = 233

 Score = 97.6 bits (49), Expect = 6e-20
 Identities = 79/89 (88%)
 Strand = Plus / Plus

                                                                       
Query: 115 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 174
           |||||||||||||||||||||||| |||||||| ||  ||  |||| |||| ||||| ||
Sbjct: 143 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 202

                                        
Query: 175 tggattgaagggagctctgcatcttgatc 203
           ||||||||||||||||||||||| |||||
Sbjct: 203 tggattgaagggagctctgcatcctgatc 231



 Score = 81.8 bits (41), Expect = 4e-15
 Identities = 73/81 (90%), Gaps = 2/81 (2%)
 Strand = Plus / Plus

                                                                       
Query: 21  ggagctcctatcattccaatgaagggtc-taccggaagggtttgtgcagctgcttgttca 79
           |||||||||||||||||||||||||||| ||||| |||||   || | |||||| |||||
Sbjct: 12  ggagctcctatcattccaatgaagggtcgtaccg-aagggccggttccgctgctcgttca 70

                                
Query: 80  tggttcccactatcctatctc 100
           |||||||||||||||||||||
Sbjct: 71  tggttcccactatcctatctc 91




>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
           (sorghum)
          Length = 244

 Score = 97.6 bits (49), Expect = 6e-20
 Identities = 79/89 (88%)
 Strand = Plus / Plus

                                                                       
Query: 115 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 174
           |||||||||||||||||||||||| |||||||| ||  ||  |||| |||| ||||| ||
Sbjct: 154 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 213

                                        
Query: 175 tggattgaagggagctctgcatcttgatc 203
           ||||||||||||||||||||||| |||||
Sbjct: 214 tggattgaagggagctctgcatcctgatc 242



 Score = 58.0 bits (29), Expect = 5e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 68  gctgcttgttcatggttcccactatcctatctc 100
           |||||| ||||||||||||||||||||||||||
Sbjct: 58  gctgctcgttcatggttcccactatcctatctc 90



 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 23 agctcctatcattccaatgaaggg 46
          ||||||||||||||||||||||||
Sbjct: 14 agctcctatcattccaatgaaggg 37




>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
          Length = 222

 Score = 93.7 bits (47), Expect = 9e-19
 Identities = 78/87 (89%), Gaps = 1/87 (1%)
 Strand = Plus / Plus

                                                                       
Query: 115 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccct-cgctgaccgctgt 173
           ||||| |||||||||||||||||| |||||||| || |||  |||| || ||||||||||
Sbjct: 131 gagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgctgt 190

                                      
Query: 174 ttggattgaagggagctctgcatcttg 200
           ||||| |||||||||||||||||||||
Sbjct: 191 ttggagtgaagggagctctgcatcttg 217



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 66  cagctgcttgttcatggttcccactatcctatctc 100
           |||||||| |||||||||||||||| ||| |||||
Sbjct: 56  cagctgctcgttcatggttcccactgtcccatctc 90




>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
           Japonica Group
          Length = 274

 Score = 54.0 bits (27), Expect = 8e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 173 tttggattgaagggagctctgcatctt 199
           |||||||||||||||||||||||||||
Sbjct: 242 tttggattgaagggagctctgcatctt 268




>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
           (sorghum)
          Length = 228

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 67  agctgcttgttcatggttcccactatcctatctc 100
           ||||||| |||||||||||||||||||| |||||
Sbjct: 57  agctgctcgttcatggttcccactatcccatctc 90



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 72/86 (83%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                       
Query: 115 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgct-gaccgctgt 173
           ||||| ||| |||||||||||||| |||||||| || |||  ||||   | |||||||  
Sbjct: 137 gagatgggcctgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgctcg 196

                                     
Query: 174 ttggattgaagggagctctgcatctt 199
           ||||||||||||||||||||| ||||
Sbjct: 197 ttggattgaagggagctctgcgtctt 222




>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
           (castor bean)
          Length = 194

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 171 tgtttggattgaagggagctctgcatct 198
           |||||||||||||||||||||| |||||
Sbjct: 160 tgtttggattgaagggagctctacatct 187




>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
           cress)
          Length = 204

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 173 tttggattgaagggagctctgcatctt 199
           |||||||||||||||||||| ||||||
Sbjct: 172 tttggattgaagggagctctacatctt 198




>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
           (papaya)
          Length = 194

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 171 tgtttggattgaagggagctct 192
           ||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181




>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
           (thale cress)
          Length = 208

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 173 tttggattgaagggagctctgcatct 198
           |||||||||||||||||||| |||||
Sbjct: 176 tttggattgaagggagctcttcatct 201




>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
          Length = 194

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 171 tgtttggattgaagggagctct 192
           ||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181