miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 55 acacttattttgggatggagggagta 80
||||||||||||||||||||||||||
Sbjct: 76 acacttattttgggatggagggagta 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 caaatactccctccgtcccaaa 29
||||||||||||||||||||||
Sbjct: 1 caaatactccctccgtcccaaa 22
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 55 acacttattttgggatggagggagta 80
||||||||||||||| ||||||||||
Sbjct: 30 acacttattttgggacggagggagta 5
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 55 acacttattttgggatggagggagta 80
||||||||||||||||||||||||||
Sbjct: 76 acacttattttgggatggagggagta 101
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 55 acacttattttgggatggagggagta 80
||||||||||||||||||||||||||
Sbjct: 83 acacttattttgggatggagggagta 108
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 55 acacttattttgggatggagggagta 80
||||||||||||||| ||||||||||
Sbjct: 30 acacttattttgggacggagggagta 5
>RF00906;MIR1122;AF525764.1/1593-1489 200361:Aegilops tauschii
subsp. strangulata
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 55 acacttattttgggatggagggagta 80
||||||||||||||||||||||||||
Sbjct: 76 acacttattttgggatggagggagta 101
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 55 acacttattttgggatggagggagtaat 82
||||||||||||||| ||||||||||||
Sbjct: 30 acacttattttgggacggagggagtaat 3
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 55 acacttattttgggatggagggagta 80
||||||||||||||| ||||||||||
Sbjct: 76 acacttattttgggacggagggagta 101
>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
Japonica Group
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 cacttattttgggatggagggagt 79
||||||||||||||||||||||||
Sbjct: 64 cacttattttgggatggagggagt 87
>RF00906;MIR1122;AAAA02012208.1/21065-20931 39946:Oryza sativa
Indica Group
Length = 135
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 60 tattttgggatggagggagtaatt 83
||||||||||||||||||||||||
Sbjct: 25 tattttgggatggagggagtaatt 2
>RF00906;MIR1122;AL731589.3/62942-62786 39947:Oryza sativa Japonica
Group
Length = 157
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 tattttgggatggagggagtaatt 83
||||||||||||||||||||||||
Sbjct: 133 tattttgggatggagggagtaatt 156
>RF00906;MIR1122;AACV01019101.1/4942-4817 39947:Oryza sativa
Japonica Group
Length = 126
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 acttattttgggatggagggagta 80
||||||||||||||||||||||||
Sbjct: 99 acttattttgggatggagggagta 122
>RF01058;MIR806;AAAA02032712.1/19270-19031 39946:Oryza sativa Indica
Group
Length = 240
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 cttattttgggatggagggagta 80
|||||||||||||||||||||||
Sbjct: 217 cttattttgggatggagggagta 239
>RF01058;MIR806;AL731615.4/103346-103100 39947:Oryza sativa
Japonica Group
Length = 247
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 55 acacttattttgggatggagggagta 80
||||||||||||||| ||||||||||
Sbjct: 27 acacttattttgggacggagggagta 2
>RF01058;MIR806;AAAA02014927.1/5775-5532 39946:Oryza sativa Indica
Group
Length = 244
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 56 cacttattttgggatggagggagtaa 81
|||||||||||||| |||||||||||
Sbjct: 26 cacttattttgggacggagggagtaa 1
>RF01058;MIR806;AP008214.1/5532426-5532666 39947:Oryza sativa
Japonica Group
Length = 241
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 cacttattttgggatggagggagtaa 81
|||||||||||||| |||||||||||
Sbjct: 216 cacttattttgggacggagggagtaa 241
>RF01058;MIR806;AP004672.3/126730-126486 39947:Oryza sativa
Japonica Group
Length = 245
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 56 cacttattttgggatggagggagtaa 81
|||||||||||||| |||||||||||
Sbjct: 26 cacttattttgggacggagggagtaa 1
>RF01058;MIR806;AACV01005022.1/1990-2230 39947:Oryza sativa Japonica
Group
Length = 241
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 cacttattttgggatggagggagtaa 81
|||||||||||||| |||||||||||
Sbjct: 216 cacttattttgggacggagggagtaa 241
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 55 acacttattttgggatggagggagta 80
||||||||||||||| ||||||||||
Sbjct: 76 acacttattttgggacggagggagta 101
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 55 acacttattttgggatggagggagta 80
||||||||||||||| ||||||||||
Sbjct: 30 acacttattttgggacggagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 55 acacttattttgggatggagggagta 80
||||||||||||||| ||||||||||
Sbjct: 75 acacttattttgggacggagggagta 100
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 caaatactccctccgtcccaaa 29
||||||||||||||||||||||
Sbjct: 1 caaatactccctccgtcccaaa 22
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ttattttgggatggagggagta 80
||||||||||||||||||||||
Sbjct: 79 ttattttgggatggagggagta 100
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 55 acacttattttgggatggagggagta 80
||||||||||||||| ||||||||||
Sbjct: 30 acacttattttgggacggagggagta 5
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium
piliferum
Length = 135
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 caaatactccctccgtcccaaa 29
||||||||||||||||||||||
Sbjct: 1 caaatactccctccgtcccaaa 22
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 55 acacttattttgggatggagggagta 80
||||||||||||||| ||||||||||
Sbjct: 30 acacttattttgggacggagggagta 5
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 55 acacttattttgggatggagggagta 80
||||||||||||||| ||||||||||
Sbjct: 30 acacttattttgggacggagggagta 5
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 55 acacttattttgggatggagggagta 80
||||||||||||||| ||||||||||
Sbjct: 30 acacttattttgggacggagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 55 acacttattttgggatggagggagta 80
||||||||||||||| ||||||||||
Sbjct: 77 acacttattttgggacggagggagta 102
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 55 acacttattttgggatggagggagta 80
||||||||||||||| ||||||||||
Sbjct: 76 acacttattttgggacggagggagta 101
>RF00906;MIR1122;AAAA02035057.1/21564-21428 39946:Oryza sativa
Indica Group
Length = 137
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 59 ttattttgggatggagggagta 80
||||||||||||||||||||||
Sbjct: 26 ttattttgggatggagggagta 5
>RF00906;MIR1122;AAAA02025635.1/7223-7330 39946:Oryza sativa
Indica Group
Length = 108
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 caaatactccctccgtcccaaa 29
||||||||||||||||||||||
Sbjct: 1 caaatactccctccgtcccaaa 22
>RF00906;MIR1122;AACV01004030.1/351-512 39947:Oryza sativa Japonica
Group
Length = 162
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 8 caaatactccctccgtcccaaa 29
||||||||||||||||||||||
Sbjct: 162 caaatactccctccgtcccaaa 141
>RF00906;MIR1122;AP003948.2/13023-12867 39947:Oryza sativa
Japonica Group
Length = 157
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 60 tattttgggatggagggagtaa 81
||||||||||||||||||||||
Sbjct: 25 tattttgggatggagggagtaa 4
>RF00906;MIR1122;AP004862.3/965-874 39947:Oryza sativa Japonica
Group
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ttattttgggatggagggagta 80
||||||||||||||||||||||
Sbjct: 67 ttattttgggatggagggagta 88
>RF00906;MIR1122;AP006526.2/71284-71151 39947:Oryza sativa Japonica
Group
Length = 134
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ttattttgggatggagggagta 80
||||||||||||||||||||||
Sbjct: 109 ttattttgggatggagggagta 130
>RF00906;MIR1122;AL731784.3/7045-7181 4530:Oryza sativa (rice)
Length = 137
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 59 ttattttgggatggagggagta 80
||||||||||||||||||||||
Sbjct: 26 ttattttgggatggagggagta 5
>RF00906;MIR1122;AL845344.4/40945-41080 4530:Oryza sativa (rice)
Length = 136
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ttattttgggatggagggagta 80
||||||||||||||||||||||
Sbjct: 111 ttattttgggatggagggagta 132
>RF00906;MIR1122;AP008217.1/24769050-24768917 39947:Oryza sativa
Japonica Group
Length = 134
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 8 caaatactccctccgtcccaaa 29
||||||||||||||||||||||
Sbjct: 134 caaatactccctccgtcccaaa 113
>RF00906;MIR1122;AL713933.6/72988-73123 4530:Oryza sativa (rice)
Length = 136
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 60 tattttgggatggagggagtaa 81
||||||||||||||||||||||
Sbjct: 25 tattttgggatggagggagtaa 4
>RF00906;MIR1122;AACV01002426.1/3889-4031 39947:Oryza sativa
Japonica Group
Length = 143
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 55 acacttattttgggatggagggagta 80
|||||||| |||||||||||||||||
Sbjct: 114 acacttatattgggatggagggagta 139
>RF00906;MIR1122;AAAA02033568.1/5983-6119 39946:Oryza sativa
Indica Group
Length = 137
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 60 tattttgggatggagggagtaa 81
||||||||||||||||||||||
Sbjct: 25 tattttgggatggagggagtaa 4
>RF00906;MIR1122;AACV01018660.1/8916-9023 39947:Oryza sativa
Japonica Group
Length = 108
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 caaatactccctccgtcccaaa 29
||||||||||||||||||||||
Sbjct: 1 caaatactccctccgtcccaaa 22
>RF00906;MIR1122;AP003508.3/31246-31125 39947:Oryza sativa Japonica
Group
Length = 122
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ttattttgggatggagggagta 80
||||||||||||||||||||||
Sbjct: 97 ttattttgggatggagggagta 118
