miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;AC235430.1/64014-64117 3847:Glycine max (soybean)
Length = 104
Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 12 tggaagaatctgtaaagctcaggagggatagcgcca 47
||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggaagaatctgtaaagctcaggagggatagcgcca 36
Score = 54.0 bits (27), Expect = 6e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 96 ttgattttctgtagcgctatccatcctgagtttcatgggttct 138
||||| |||| | ||||||||||||||||||||||||| ||||
Sbjct: 58 ttgatcttctcttgcgctatccatcctgagtttcatggcttct 100
>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
(papaya)
Length = 133
Score = 67.9 bits (34), Expect = 4e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 14 gaagaatctgtaaagctcaggagggatagcgcca 47
||||||||||||||||||||||||||||||||||
Sbjct: 3 gaagaatctgtaaagctcaggagggatagcgcca 36
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 109 gcgctatccatcctgagtttcatgggttcttc 140
|||||||| ||||||||||||| |||||||||
Sbjct: 100 gcgctatctatcctgagtttcacgggttcttc 131
>RF00689;MIR390;AC189543.2/98818-98914 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 67.9 bits (34), Expect = 4e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 14 gaagaatctgtaaagctcaggagggatagcgcca 47
||||||||||||||||||||||||||||||||||
Sbjct: 3 gaagaatctgtaaagctcaggagggatagcgcca 36
>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana
(thale cress)
Length = 99
Score = 67.9 bits (34), Expect = 4e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 14 gaagaatctgtaaagctcaggagggatagcgcca 47
||||||||||||||||||||||||||||||||||
Sbjct: 3 gaagaatctgtaaagctcaggagggatagcgcca 36
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 109 gcgctatccatcctgagtttcatgggttcttc 140
||||||||||||||||||||||| || |||||
Sbjct: 66 gcgctatccatcctgagtttcattggctcttc 97
>RF00689;MIR390;AARH01006918.1/30613-30728 3694:Populus
trichocarpa
Length = 116
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 12 tggaagaatctgtaaagctcaggagggatagcgcc 46
||||||||||||| |||||||||||||||||||||
Sbjct: 1 tggaagaatctgttaagctcaggagggatagcgcc 35
>RF00689;MIR390;AASG02008232.1/8506-8369 3988:Ricinus communis
(castor bean)
Length = 138
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 102 ttctgtagcgctatccatcctgagtttcatgggttcttc 140
|||| ||||||||||||||||||||||||| ||||||||
Sbjct: 98 ttctatagcgctatccatcctgagtttcattggttcttc 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 12 tggaagaatctgtaaagctcaggagggatagcgcca 47
||||||||||| ||||||||||||||||||||||
Sbjct: 1 tggaagaatctaataagctcaggagggatagcgcca 36
>RF00689;MIR390;ABIM01002245.1/567-665 3649:Carica papaya (papaya)
Length = 99
Score = 60.0 bits (30), Expect = 9e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 14 gaagaatctgtaaagctcaggagggatagcgcca 47
||||||||||| ||||||||||||||||||||||
Sbjct: 3 gaagaatctgttaagctcaggagggatagcgcca 36
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 109 gcgctatccatcctgagtttca 130
||||||||||||||||||||||
Sbjct: 66 gcgctatccatcctgagtttca 87
>RF00689;MIR390;AC143338.29/35527-35410 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 60.0 bits (30), Expect = 9e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 96 ttgattttctgtagcgctatccatcctgagtttcatgggttcttca 141
||||| |||| | ||||||||||||||||||||||||| |||||||
Sbjct: 72 ttgatcttctcttgcgctatccatcctgagtttcatggcttcttca 117
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 15 aagaatctgtaaagctcaggagggatagcgcca 47
|||||||||| ||||||||||||||||||||||
Sbjct: 4 aagaatctgttaagctcaggagggatagcgcca 36
>RF00689;MIR390;AM442301.1/4341-4465 29760:Vitis vinifera
Length = 125
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 16 agaatctgtaaagctcaggagggatagcgccac 48
||||||||| |||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccac 37
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 109 gcgctatccatcctgagtttcatgggttcttc 140
||||||||||||||||||||||| ||||||||
Sbjct: 92 gcgctatccatcctgagtttcattggttcttc 123
>RF00689;MIR390;AARH01000472.1/96655-96783 3694:Populus
trichocarpa
Length = 129
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 16 agaatctgtaaagctcaggagggatagcgcca 47
||||||||| ||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgcca 36
>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
Length = 146
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 16 agaatctgtaaagctcaggagggatagcgcca 47
||||||||| ||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgcca 36
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 109 gcgctatccatcctgagtttcatgggttcttc 140
|||||||| ||||||||||||| |||||||||
Sbjct: 113 gcgctatctatcctgagtttcacgggttcttc 144
>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
pekinensis
Length = 110
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 21 ctgtaaagctcaggagggatagcgcca 47
|||||||||||||||||||||||||||
Sbjct: 10 ctgtaaagctcaggagggatagcgcca 36
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 109 gcgctatccatcctgagtttcatgggttcttc 140
||||||||||||||||||| ||||| ||||||
Sbjct: 77 gcgctatccatcctgagttccatggcttcttc 108
>RF00689;MIR390;AARH01003823.1/151507-151375 3694:Populus
trichocarpa
Length = 133
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 19 atctgtaaagctcaggagggatagcgcca 47
|||||| ||||||||||||||||||||||
Sbjct: 8 atctgttaagctcaggagggatagcgcca 36
>RF00689;MIR390;AB025632.1/22985-23104 3702:Arabidopsis thaliana
(thale cress)
Length = 120
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 24 taaagctcaggagggatagcgcca 47
||||||||||||||||||||||||
Sbjct: 13 taaagctcaggagggatagcgcca 36
>RF00689;MIR390;AASG02000259.1/53979-54102 3988:Ricinus communis
(castor bean)
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 109 gcgctatccatcctgagtttcatgggttcttc 140
|||||||||||||||||||||| ||||||||
Sbjct: 91 gcgctatccatcctgagtttcacaggttcttc 122
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 20 tctgtaaagctcaggagggatagcgcc 46
||||| |||||||||||||||||||||
Sbjct: 9 tctgttaagctcaggagggatagcgcc 35
>RF00689;MIR390;AAAA02011305.1/16847-16930 39946:Oryza sativa
Indica Group
Length = 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 aagctcaggagggatagcgccacgaaa 52
||||||||||||||||||||| |||||
Sbjct: 15 aagctcaggagggatagcgcctcgaaa 41
