miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY821693.1/1381-1215 58935:Australopyrum velutinum
Length = 167
Score = 97.6 bits (49), Expect = 8e-20
Identities = 119/140 (85%), Gaps = 3/140 (2%)
Strand = Plus / Minus
Query: 34 tactccctccgttcctaaatataagacttttta-agattttatttcaaactacgtatgga 92
||||||||||||||||||||||||| ||||||| |||||| | | ||||| || |||
Sbjct: 166 tactccctccgttcctaaatataagtctttttagagatttgaatatggactacatacgga 107
Query: 93 tgtatatatacatattttagattg--gattcattcattttgctctgtatgtagtccgtag 150
|| ||||| || ||||||||| || |||||| ||||||||||| ||||||||||| ||
Sbjct: 106 tgaatatagacgtattttagagtgtagattcactcattttgctccgtatgtagtccatat 47
Query: 151 tagaatctctagaaagactt 170
||||||||||| ||||||||
Sbjct: 46 tagaatctctaaaaagactt 27
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 34 tactccctccgttcctaaatataagacttttta 66
||||||||| ||||||||||||||| |||||||
Sbjct: 5 tactccctctgttcctaaatataagtcttttta 37
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 87.7 bits (44), Expect = 8e-17
Identities = 99/115 (86%), Gaps = 3/115 (2%)
Strand = Plus / Plus
Query: 34 tactccctccgttcctaaatataagacttttta-agattttatttcaaactacgtatgga 92
||||||||||||||||||||||||||| ||||| ||||| || | ||||||| || |||
Sbjct: 1 tactccctccgttcctaaatataagaccttttagagattgtactataaactacatacgga 60
Query: 93 tgtatatatacatattttaga--ttggattcattcattttgctctgtatgtagtc 145
|||| ||| |||||||||||| | |||||| ||||||||||| ||||||||||
Sbjct: 61 tgtacatagacatattttagagtatagattcactcattttgctccgtatgtagtc 115
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 34 tactccctccgttcctaaatataagacttttta 66
||||||||||||||| ||||||||||| |||||
Sbjct: 163 tactccctccgttccaaaatataagacctttta 131
>RF00906;MIR1122;DQ352178.1/5805-5640 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 166
Score = 85.7 bits (43), Expect = 3e-16
Identities = 101/118 (85%), Gaps = 3/118 (2%)
Strand = Plus / Plus
Query: 31 aactactccctccgttcctaaatataagacttttta-agattttatttcaaactacgtat 89
|||||||||||||||||||||||||||||| ||||| ||||| || | ||||||| ||
Sbjct: 1 aactactccctccgttcctaaatataagaccttttagagattgtactataaactacatac 60
Query: 90 ggatgtatatatacatattttaga--ttggattcattcattttgctctgtatgtagtc 145
||||||| ||| |||||||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 61 ggatgtacatagacatattttagagtatagattcgctcattttgctccgtatgtagtc 118
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 34 tactccctccgttcctaaatataagacttttta 66
||||||||||||||| ||||||||||| |||||
Sbjct: 166 tactccctccgttccaaaatataagacctttta 134
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 67.9 bits (34), Expect = 7e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 198 ctagtacaaagttgtacttagctcgagacatttattttggaagggagggagtat 251
|||||||||||||||||| |||| |||| | ||||||||||| |||||||||||
Sbjct: 49 ctagtacaaagttgtactaagcttgagatagttattttggaacggagggagtat 102
>RF00906;MIR1122;AY853252.1/232318-232152 4513:Hordeum vulgare
Length = 167
Score = 65.9 bits (33), Expect = 3e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 30 taactactccctccgttcctaaatataagacttttta 66
||||||||||||||||||||||||||||||| |||||
Sbjct: 1 taactactccctccgttcctaaatataagacctttta 37
Score = 58.0 bits (29), Expect = 7e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 34 tactccctccgttcctaaatataagacttttta 66
||||||||||||||||||||||||||| |||||
Sbjct: 166 tactccctccgttcctaaatataagacctttta 134
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 65.9 bits (33), Expect = 3e-10
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 199 tagtacaaagttgtacttagctcgagacatttattttggaagggagggagtat 251
||||||||||||||||| |||| |||||| ||||||||| | |||||||||||
Sbjct: 56 tagtacaaagttgtactaagcttgagacacttattttgggacggagggagtat 4
>RF00906;MIR1122;AY013246.1/66605-66771 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 167
Score = 61.9 bits (31), Expect = 5e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 32 actactccctccgttcctaaatataagacttttta 66
||||||||||||||||||||||||||||| |||||
Sbjct: 165 actactccctccgttcctaaatataagacctttta 131
Score = 60.0 bits (30), Expect = 2e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 33 ctactccctccgttcctaaatataagacttttta 66
|||||||||||||||||||||||||||| |||||
Sbjct: 1 ctactccctccgttcctaaatataagacctttta 34
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 60.0 bits (30), Expect = 2e-08
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 198 ctagtacaaagttgtacttagctcgagacatttattttggaagggagggagtat 251
|||||||||||||||||| || | |||||| ||||||||| | |||||||||||
Sbjct: 49 ctagtacaaagttgtactaaggttgagacacttattttgggacggagggagtat 102
>RF00906;MIR1122;AK252971.1/1469-1351 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 60.0 bits (30), Expect = 2e-08
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 117 gattcattcattttgctctgtatgtagtccgtagtagaatctctagaaagactt 170
|||||| ||||||||||| ||||||||||| |||| |||||||| ||||||||
Sbjct: 80 gattcactcattttgctccgtatgtagtccatagtgtaatctctaaaaagactt 27
Score = 58.0 bits (29), Expect = 7e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 34 tactccctccgttcctaaatataagacttttta 66
||||||||||||||||||||||||| |||||||
Sbjct: 5 tactccctccgttcctaaatataagtcttttta 37
>RF00906;MIR1122;AF521177.1/76812-76977 4513:Hordeum vulgare
Length = 166
Score = 60.0 bits (30), Expect = 2e-08
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 33 ctactccctccgttcctaaatataagacttttta 66
|||||||||||||||||||||||||| |||||||
Sbjct: 165 ctactccctccgttcctaaatataagtcttttta 132
Score = 58.0 bits (29), Expect = 7e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 34 tactccctccgttcctaaatataagacttttta 66
||||||||||||||||||||||||| |||||||
Sbjct: 1 tactccctccgttcctaaatataagtcttttta 33
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 60.0 bits (30), Expect = 2e-08
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 198 ctagtacaaagttgtacttagctcgagacatttattttggaagggagggagtat 251
|||||||||| ||||||| |||| ||||| ||||||||||| |||||||||||
Sbjct: 57 ctagtacaaaattgtactacgctcaagacacttattttggaacggagggagtat 4
>RF00906;MIR1122;FJ548567.1/3141-3305 4513:Hordeum vulgare
Length = 165
Score = 58.0 bits (29), Expect = 7e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 34 tactccctccgttcctaaatataagacttttta 66
||||||||||||||||||||||||| |||||||
Sbjct: 165 tactccctccgttcctaaatataagtcttttta 133
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 34 tactccctccgttcctaaatataagacttttta 66
|||||||||||||||||||| |||| |||||||
Sbjct: 3 tactccctccgttcctaaatgtaagtcttttta 35
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 58.0 bits (29), Expect = 7e-08
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 199 tagtacaaagttgtacttagctcgagacatttattttggaagggagggagtat 251
|||||||| |||||||| |||| |||||| ||||||||| | |||||||||||
Sbjct: 56 tagtacaaggttgtactaagcttgagacacttattttgggacggagggagtat 4
>RF00906;MIR1122;DQ871219.1/152084-152250 85692:Triticum turgidum
subsp. dicoccoides
Length = 167
Score = 56.0 bits (28), Expect = 3e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 32 actactccctccgttcctaaatataagacttt 63
||||||||||||||||||||||||||| ||||
Sbjct: 3 actactccctccgttcctaaatataagtcttt 34
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 34 tactccctccgttcctaaatataag 58
|||||||||||||||||||||||||
Sbjct: 165 tactccctccgttcctaaatataag 141
>RF00906;MIR1122;EU812563.1/51726-51572 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 155
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 34 tactccctccgttcctaaatataagactttt 64
||||||||||||||||||||||||| |||||
Sbjct: 151 tactccctccgttcctaaatataagtctttt 121
Score = 52.0 bits (26), Expect = 4e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 34 tactccctccgttcctaaatataagacttt 63
||||||||||||||||||||||||| ||||
Sbjct: 5 tactccctccgttcctaaatataagtcttt 34
>RF00906;MIR1122;EU545231.1/2974-3138 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 165
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 34 tactccctccgttcctaaatataagactttt 64
||||||||||||||||||||||||| |||||
Sbjct: 1 tactccctccgttcctaaatataagtctttt 31
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 33 ctactccctccgttcctaaatataagacttt 63
|||||||||||||||||||||||||| ||||
Sbjct: 165 ctactccctccgttcctaaatataagtcttt 135
>RF00906;MIR1122;AJ400714.1/2947-2781 4565:Triticum aestivum
(bread wheat)
Length = 167
Score = 52.0 bits (26), Expect = 4e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 34 tactccctccgttcctaaatataagacttt 63
||||||||||||||||||||||||| ||||
Sbjct: 2 tactccctccgttcctaaatataagtcttt 31
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 52.0 bits (26), Expect = 4e-06
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 198 ctagtacaaagttgtacttagctcgagacatttattttggaagggagggagtat 251
|||||||||| || |||| ||||| ||||| ||||||||| | |||||||||||
Sbjct: 57 ctagtacaaatttttactaagctcaagacacttattttgggacggagggagtat 4
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 52.0 bits (26), Expect = 4e-06
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 198 ctagtacaaagttgtacttagctcgagacatttattttggaagggagggagtat 251
|||||||||||||||||| ||| |||||| ||||||||| | |||| ||||||
Sbjct: 57 ctagtacaaagttgtactaggcttgagacagttattttgggacggagtgagtat 4
>RF00906;MIR1122;AK248896.1/138-279 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 142
Score = 52.0 bits (26), Expect = 4e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 34 tactccctccgttcctaaatataagacttt 63
||||||||||||||||||||||||| ||||
Sbjct: 138 tactccctccgttcctaaatataagtcttt 109
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 52.0 bits (26), Expect = 4e-06
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 198 ctagtacaaagttgtacttagctcgagacatttattttggaagggagggagtat 251
|||||||||||||||||| ||| || ||| |||||||| || |||||||||||
Sbjct: 57 ctagtacaaagttgtactaagcatgaaacaattattttgaaatggagggagtat 4
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 52.0 bits (26), Expect = 4e-06
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 202 tacaaagttgtacttagctcgagacatttattttggaagggagggagtat 251
|||||||||||||| |||| |||||| |||||||| | |||||||||||
Sbjct: 53 tacaaagttgtactaagcttgagacagttattttgagatggagggagtat 4
>RF00906;MIR1122;AF338431.1/8563-8727 37682:Aegilops tauschii
Length = 165
Score = 52.0 bits (26), Expect = 4e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 34 tactccctccgttcctaaatataagacttt 63
||||||||||||||||||||||||| ||||
Sbjct: 5 tactccctccgttcctaaatataagtcttt 34
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 34 tactccctccgttcctaaatataag 58
|||||||||||||||||||||||||
Sbjct: 161 tactccctccgttcctaaatataag 137
>RF00906;MIR1122;AP008214.1/20360044-20360123 39947:Oryza sativa
Japonica Group
Length = 80
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 34 tactccctccgttcctaaatataaga 59
||||||||||||||||||||||||||
Sbjct: 76 tactccctccgttcctaaatataaga 51
>RF00906;MIR1122;AACV01003934.1/29289-29133 39947:Oryza sativa
Japonica Group
Length = 157
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 33 ctactccctccgttcctaaatataag 58
||||||||||||||||||||||||||
Sbjct: 4 ctactccctccgttcctaaatataag 29
>RF00906;MIR1122;FM164415.1/16902-16796 4513:Hordeum vulgare
Length = 107
Score = 50.1 bits (25), Expect = 2e-05
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 118 attcattcattttgctctgtatgtagtccgtagtagaatctctagaaagactt 170
|||||||||||| || |||||||||||||||| ||||| |||||||||||
Sbjct: 79 attcattcatttcacttcgtatgtagtccgtagtgaaatctttagaaagactt 27
>RF00906;MIR1122;AC129718.2/26799-26917 39947:Oryza sativa
Japonica Group
Length = 119
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 34 tactccctccgttcctaaatataag 58
|||||||||||||||||||||||||
Sbjct: 5 tactccctccgttcctaaatataag 29
>RF00906;MIR1122;AP008207.1/42091247-42091146 39947:Oryza sativa
Japonica Group
Length = 102
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 actccctccgttcctaaatataaga 59
|||||||||||||||||||||||||
Sbjct: 6 actccctccgttcctaaatataaga 30
>RF00906;MIR1122;AC166046.15/79888-79744 3880:Medicago truncatula
(barrel medic)
Length = 145
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 31 aactactccctccgttcctaaatataag 58
|||||||||||||||||| |||||||||
Sbjct: 2 aactactccctccgttccaaaatataag 29
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 7e-05
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 199 tagtacaaagttgtacttagctcgagacatttattttggaagggagggagta 250
||||||||| ||||| | |||| ||||| ||||||||||| ||||||||||
Sbjct: 56 tagtacaaaattgtattaagcttaagacacttattttggaacggagggagta 5
>RF00906;MIR1122;FJ188379.1/3521-3613 4513:Hordeum vulgare
Length = 93
Score = 48.1 bits (24), Expect = 7e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 34 tactccctccgttcctaaatataagacttttt 65
||||||||||||||||||||||| ||| ||||
Sbjct: 89 tactccctccgttcctaaatatatgacgtttt 58
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 48.1 bits (24), Expect = 7e-05
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 199 tagtacaaagttgtacttagctcgagacatttattttggaagggagggagta 250
||||||||||||||||| ||| |||||| |||||||| | ||||||||||
Sbjct: 56 tagtacaaagttgtactaggcttgagacacttattttgagacggagggagta 5
>RF00906;MIR1122;AAAA02028211.1/1243-1359 39946:Oryza sativa
Indica Group
Length = 117
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 31 aactactccctccgttcctaaatataag 58
||||||||||||||| ||||||||||||
Sbjct: 2 aactactccctccgtccctaaatataag 29
>RF00906;MIR1122;AACV01023423.1/18495-18379 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 31 aactactccctccgttcctaaatataag 58
||||||||||||||| ||||||||||||
Sbjct: 2 aactactccctccgtccctaaatataag 29
>RF00906;MIR1122;AP008207.1/21121800-21121682 39947:Oryza sativa
Japonica Group
Length = 119
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 34 tactccctccgttcctaaatataa 57
||||||||||||||||||||||||
Sbjct: 115 tactccctccgttcctaaatataa 92
>RF00906;MIR1122;AP003258.3/44726-44846 39947:Oryza sativa
Japonica Group
Length = 121
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 31 aactactccctccgttcctaaatataag 58
||||||| ||||||||||||||||||||
Sbjct: 2 aactacttcctccgttcctaaatataag 29
>RF00906;MIR1122;AC135958.2/60124-60233 39947:Oryza sativa Japonica
Group
Length = 110
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 32 actactccctccgttcctaaatataag 58
|||||||||||||| ||||||||||||
Sbjct: 108 actactccctccgtccctaaatataag 82
>RF00906;MIR1122;AC092779.5/114881-115036 39947:Oryza sativa
Japonica Group
Length = 156
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 32 actactccctccgttcctaaatataag 58
|||||||||||||| ||||||||||||
Sbjct: 154 actactccctccgtccctaaatataag 128
>RF00906;MIR1122;AP004994.2/69469-69314 39947:Oryza sativa
Japonica Group
Length = 156
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 32 actactccctccgttcctaaatataag 58
|||||||||||||| ||||||||||||
Sbjct: 3 actactccctccgtccctaaatataag 29
>RF00906;MIR1122;AAAA02018670.1/1486-1331 39946:Oryza sativa
Indica Group
Length = 156
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 32 actactccctccgttcctaaatataag 58
|||||||||||||| ||||||||||||
Sbjct: 3 actactccctccgtccctaaatataag 29
>RF00906;MIR1122;AAAA02021208.1/38295-38158 39946:Oryza sativa
Indica Group
Length = 138
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 34 tactccctccgttcctaaatata 56
|||||||||||||||||||||||
Sbjct: 5 tactccctccgttcctaaatata 27
