miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 89.7 bits (45), Expect = 7e-18
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 10 actccctctgtcccaaaataagtgtcactgatctattataaattttgtactaatttaata 69
|||||||| ||||||||||||||||| ||| |||| ||| | |||||||||| ||| ||
Sbjct: 101 actccctccgtcccaaaataagtgtcgctgctctagtattatatttgtactaacttagta 42
Query: 70 ctaaatctgcgacacttattctgggacgaagagagta 106
|||||| ||||||||||||| ||||||| || |||||
Sbjct: 41 ctaaatttgcgacacttattttgggacggagggagta 5
Score = 58.0 bits (29), Expect = 3e-08
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 10 actccctctgtcccaaaataagtgtcactgatctattataaattttgtactaatttaata 69
|||||||| ||||||||||||||||| | || || || || || |||| ||| |||||
Sbjct: 6 actccctccgtcccaaaataagtgtcgcaaatttagtactaagttagtacaaatataata 65
Query: 70 ctaaatctgcgacacttattctgggacgaagagagtataat 110
||| | | |||||||||||| ||||||| || |||||||||
Sbjct: 66 ctagagcagcgacacttattttgggacggagggagtataat 106
>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 71.9 bits (36), Expect = 2e-12
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 10 actccctctgtcccaaaataagtgtcactgatctattataaattttgtactaatttaata 69
|||||||||||||||||||||||||||| || ||| | || || |||| ||||| |||
Sbjct: 101 actccctctgtcccaaaataagtgtcacaaatttataactaaattagtacaaattttata 42
Query: 70 ctaaatctgcgacacttatt 89
||||||| ||||||||||||
Sbjct: 41 ctaaatcagcgacacttatt 22
Score = 69.9 bits (35), Expect = 7e-12
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 10 actccctctgtcccaaaataagtgtcactgatctattataaattttgtactaatttaata 69
|||||||| || ||||||||||||| ||||| || |||||| |||||||||||||| |
Sbjct: 6 actccctccgtatcaaaataagtgtcgctgatttagtataaaatttgtactaatttagtt 65
Query: 70 ctaaatctgcgacacttattctgggac 96
||||| || |||||||||| ||||||
Sbjct: 66 ataaatttgtgacacttattttgggac 92
>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 69.9 bits (35), Expect = 7e-12
Identities = 83/99 (83%)
Strand = Plus / Minus
Query: 10 actccctctgtcccaaaataagtgtcactgatctattataaattttgtactaatttaata 69
|||||||| |||| |||||||||||| ||||||| || ||| |||||||| ||||| ||
Sbjct: 101 actccctccgtcctaaaataagtgtcgttgatctagtacaaaatttgtactcatttagta 42
Query: 70 ctaaatctgcgacacttattctgggacgaagagagtata 108
|| ||| |||| |||||||| | ||||||| |||||||
Sbjct: 41 ctgaatatgcgtcacttattttaagacgaagggagtata 3
>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 54.0 bits (27), Expect = 4e-07
Identities = 75/91 (82%)
Strand = Plus / Plus
Query: 10 actccctctgtcccaaaataagtgtcactgatctattataaattttgtactaatttaata 69
|||||||| ||| |||||||||||||| || || ||| || || ||| |||||| ||
Sbjct: 6 actccctccgtcttaaaataagtgtcacaaatttagtattaagttagtataaatttagta 65
Query: 70 ctaaatctgcgacacttattctgggacgaag 100
||||| | |||||||||||| ||||||||||
Sbjct: 66 ctaaaacagcgacacttattttgggacgaag 96
Score = 54.0 bits (27), Expect = 4e-07
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 19 gtcccaaaataagtgtcactgatctattataaattttgtactaatttaatactaaatctg 78
||||||||||||||||| ||| | || || || ||| |||||| |||||||||||| ||
Sbjct: 92 gtcccaaaataagtgtcgctgttttagtactaaatttatactaacttaatactaaatttg 33
Query: 79 cgacacttatt 89
||||||||||
Sbjct: 32 tgacacttatt 22
>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 actccctctgtcccaaaataagtg 33
||||||||||||||||||||||||
Sbjct: 63 actccctctgtcccaaaataagtg 40
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 actccctctgtcccaaaataagtg 33
||||||||||||||||||||||||
Sbjct: 6 actccctctgtcccaaaataagtg 29
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 actccctctgtcccaaaataagtg 33
||||||||||||||||||||||||
Sbjct: 6 actccctctgtcccaaaataagtg 29
>RF00906;MIR1122;ABXC01004408.1/208298-208202 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 actccctctgtcccaaaataagtgtca 36
||||||||||||||||||| |||||||
Sbjct: 6 actccctctgtcccaaaatgagtgtca 32
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 actccctctgtcccaaaataagtgtc 35
|||||||| |||||||||||||||||
Sbjct: 100 actccctccgtcccaaaataagtgtc 75
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 actccctctgtcccaaaataagtgtc 35
|||||||| |||||||||||||||||
Sbjct: 6 actccctccgtcccaaaataagtgtc 31
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 actccctctgtcccaaaataagtgtc 35
|||||||| |||||||||||||||||
Sbjct: 99 actccctccgtcccaaaataagtgtc 74
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 actccctctgtcccaaaataagtgtc 35
|||||||| |||||||||||||||||
Sbjct: 6 actccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;D30809.1/4836-4921 4565:Triticum aestivum (bread
wheat)
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 68 tactaaatctgcgacacttattctgggacg 97
||||||||| |||||||||||| |||||||
Sbjct: 44 tactaaatcagcgacacttattttgggacg 73
>RF00906;MIR1122;EF560592.1/17009-17118 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 110
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 68 tactaaatctgcgacacttattctgggacg 97
||||||||| |||||||||||| |||||||
Sbjct: 68 tactaaatcagcgacacttattttgggacg 97
>RF00906;MIR1122;FJ491378.1/3751-3855 4550:Secale cereale (rye)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 12 tccctctgtcccaaaataagtgtcactgat 41
|||||| |||||||||||||||||| ||||
Sbjct: 8 tccctccgtcccaaaataagtgtcattgat 37
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tccctctgtcccaaaataagtg 33
||||||||||||||||||||||
Sbjct: 8 tccctctgtcccaaaataagtg 29
>RF00906;MIR1122;EU282656.1/645-750 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 actccctctgtcccaaaataagtgtc 35
|||||||| |||||||||||||||||
Sbjct: 101 actccctcggtcccaaaataagtgtc 76
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 actccctctgtcccaaaataagtgtc 35
|||||||| |||||||||||||||||
Sbjct: 6 actccctccgtcccaaaataagtgtc 31
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 actccctctgtcccaaaataagtgtc 35
|||||||| |||||||||||||||||
Sbjct: 100 actccctccgtcccaaaataagtgtc 75
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 actccctctgtcccaaaataagtgtc 35
|||||||| |||||||||||||||||
Sbjct: 6 actccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 actccctctgtcccaaaataagtgtc 35
|||||||| |||||||||||||||||
Sbjct: 6 actccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 actccctctgtcccaaaataagtgtc 35
|||||||| |||||||||||||||||
Sbjct: 6 actccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 actccctctgtcccaaaataagtgtc 35
|||||||| |||||||||||||||||
Sbjct: 6 actccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 actccctctgtcccaaaataagtgtc 35
|||||||| |||||||||||||||||
Sbjct: 100 actccctccgtcccaaaataagtgtc 75
