miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AB239678.1/2131-2247 52163:Triticum monococcum
subsp. aegilopoides
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 34 gtactccctccgtcccgaattaagtga 60
|||||||||||||||| ||||||||||
Sbjct: 114 gtactccctccgtcccaaattaagtga 88
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 35 tactccctccgtcccgaattaagtga 60
||||||||||||||| ||||||||||
Sbjct: 5 tactccctccgtcccaaattaagtga 30
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 34 gtactccctccgtcccgaattaagtga 60
|||||||||||||||| ||||||||||
Sbjct: 91 gtactccctccgtcccaaattaagtga 65
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 35 tactccctccgtcccgaattaagtga 60
|||||||||||||||||| |||||||
Sbjct: 103 tactccctccgtcccgaaataagtga 78
>RF00906;MIR1122;AY083681.1/2468-2333 4498:Avena sativa (oat)
Length = 136
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 31 catgtactccctccgtcccgaa 52
||||||||||||||||||||||
Sbjct: 136 catgtactccctccgtcccgaa 115
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 35 tactccctccgtcccgaattaagtga 60
||||||||||||||| ||||||||||
Sbjct: 5 tactccctccgtcccaaattaagtga 30
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 35 tactccctccgtcccgaattaagtga 60
|||||||||||||||| |||||||||
Sbjct: 5 tactccctccgtcccgtattaagtga 30
