miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 101 bits (51), Expect = 2e-21
Identities = 75/83 (90%)
Strand = Plus / Minus
Query: 4 gtactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagc 63
||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||
Sbjct: 90 gtactccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaagg 31
Query: 64 tcgtgtattagtttgcagaggga 86
|| | ||||||||| ||||||||
Sbjct: 30 tcttatattagtttacagaggga 8
Score = 89.7 bits (45), Expect = 6e-18
Identities = 78/89 (87%)
Strand = Plus / Plus
Query: 3 agtactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaag 62
|||| ||||||||||||||||||||||| ||| |||||||||| |||| |||||||||
Sbjct: 3 agtattccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaag 62
Query: 63 ctcgtgtattagtttgcagagggagtaca 91
|| | ||||||||| |||||||||||||
Sbjct: 63 gtcttatattagtttacagagggagtaca 91
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 95.6 bits (48), Expect = 9e-20
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 2 tagtactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaa 61
||||||||||||||||||||||||||||| | | ||||||||||||||||| ||||||
Sbjct: 2 tagtactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaac 61
Query: 62 gctcgtgtattagtttgcagagggagta 89
|||| | ||||||||| | |||||||||
Sbjct: 62 gctcttatattagtttacggagggagta 89
Score = 60.0 bits (30), Expect = 5e-09
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
||||||||| |||||||||||||||| | | |||| |||| |||| ||||||| |||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgct 30
Query: 65 cgtgtattagtttgcagagggagtac 90
| | ||||||||| ||||||||||||
Sbjct: 29 cttatattagtttacagagggagtac 4
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 89.7 bits (45), Expect = 6e-18
Identities = 75/85 (88%)
Strand = Plus / Minus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
||||||||| |||||||||||||||| | | ||||| ||||||||||| ||||||| |||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgct 30
Query: 65 cgtgtattagtttgcagagggagta 89
| | ||||||||| |||||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
Score = 73.8 bits (37), Expect = 3e-13
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
|||||||||||||||||||||||||| | | |||||||||| |||| ||||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgct 64
Query: 65 cgtgtattagtttgcagagggagta 89
| | ||||||||| | |||||||||
Sbjct: 65 cttatattagtttacggagggagta 89
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 75/86 (87%)
Strand = Plus / Minus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
|||| ||||||||||||||||||||| | | ||||||||||||||||| | ||||| |||
Sbjct: 89 tacttcctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgct 30
Query: 65 cgtgtattagtttgcagagggagtac 90
| | ||||||||| | ||||||||||
Sbjct: 29 cttatattagtttacggagggagtac 4
Score = 63.9 bits (32), Expect = 3e-10
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 2 tagtactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaa 61
|||||||||||| |||||||||||||||| | | ||| |||||| |||| |||||||
Sbjct: 2 tagtactccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaat 61
Query: 62 gctcgtgtattagtttgcagagggagta 89
|||| | ||||||||| |||||| ||||
Sbjct: 62 gctcttatattagtttacagaggaagta 89
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 75/86 (87%)
Strand = Plus / Minus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
|||||||||||||||||||||||||| | | ||||||||||||||||| |||||| |||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcactattttagtattctaaacgct 30
Query: 65 cgtgtattagtttgcagagggagtac 90
| ||||||||| | ||||||||||
Sbjct: 29 tttatattagtttacggagggagtac 4
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 83.8 bits (42), Expect = 4e-16
Identities = 75/85 (88%), Gaps = 2/85 (2%)
Strand = Plus / Minus
Query: 4 gtactccctctgtaaactaatataagatcttgtagatcactatt--ttagttatctaaaa 61
||||||||||||||||||||||||||| ||| |||||||||| | ||||| ||||||||
Sbjct: 92 gtactccctctgtaaactaatataagaccttttagatcactactacttagtgatctaaaa 33
Query: 62 gctcgtgtattagtttgcagaggga 86
| || | ||||||||| ||||||||
Sbjct: 32 ggtcttatattagtttacagaggga 8
Score = 79.8 bits (40), Expect = 6e-15
Identities = 79/91 (86%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 3 agtactccctctgtaaactaatataagatcttgtagatcacta--ttttagttatctaaa 60
|||| ||||||||||||||||||||||| ||| |||||||||| | |||| |||||||
Sbjct: 3 agtattccctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaa 62
Query: 61 agctcgtgtattagtttgcagagggagtaca 91
|| || | ||||||||| |||||||||||||
Sbjct: 63 aggtcttatattagtttacagagggagtaca 93
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 81.8 bits (41), Expect = 1e-15
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
|||||||||||||||||||||||||| | |||||||||| |||||| |||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgct 64
Query: 65 cgtgtattagtttgcagagggagta 89
| | ||||||||| |||||||||||
Sbjct: 65 cttatattagtttacagagggagta 89
Score = 65.9 bits (33), Expect = 8e-11
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
|||||||||||||||||||||||||| | |||||||||| |||| |||||| |||
Sbjct: 89 tactccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgct 30
Query: 65 cgtgtattagtttgcagagggagta 89
| | ||||||||| |||||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 79.8 bits (40), Expect = 6e-15
Identities = 77/88 (87%), Gaps = 1/88 (1%)
Strand = Plus / Minus
Query: 2 tagtactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaa 61
||||||||||| ||| ||||||||||||| | | |||||||||| |||||| |||||||
Sbjct: 91 tagtactccct-tgtgaactaatataagagcgtttagatcactactttagtgatctaaac 33
Query: 62 gctcgtgtattagtttgcagagggagta 89
|||| | ||||||||| |||||||||||
Sbjct: 32 gctcttatattagtttacagagggagta 5
Score = 63.9 bits (32), Expect = 3e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
|||||||||||||||||||||||||| | | |||||||||| |||| ||||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgct 64
Query: 65 cgtgtattagtt 76
| | ||||||||
Sbjct: 65 cttatattagtt 76
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 3 agtactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaag 62
|||||||||||||||||||||||||||| | |||||||||| |||||| || |||||
Sbjct: 3 agtactccctctgtaaactaatataagagtgtttagatcactagtttagtaatttaaaaa 62
Query: 63 ctcgtgtattagtttgcagagggagta 89
|| | ||||||||| |||||||||||
Sbjct: 63 cttttatattagtttacagagggagta 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
|||||||||||||||||||||||| | || || || |||| |||| ||||||| ||
Sbjct: 89 tactccctctgtaaactaatataaaagtttttaaattactaaactagtgatctaaacact 30
Query: 65 cgtgtattagtttgcagagggagtac 90
| | ||||||||| ||||||||||||
Sbjct: 29 cttatattagtttacagagggagtac 4
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 3 agtactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaag 62
||||||||| |||||||||||||||| | | | |||| ||||| |||||| ||||||| |
Sbjct: 91 agtactccccctgtaaactaatataaaagcatttagaacactactttagtaatctaaacg 32
Query: 63 ctcgtgtattagtttgcagagggagta 89
||| | ||||||||| |||||||||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 5 tactccctctgtaaactaatataaga 30
||||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataaga 30
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 75.8 bits (38), Expect = 9e-14
Identities = 77/89 (86%), Gaps = 2/89 (2%)
Strand = Plus / Minus
Query: 2 tagtactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaa 61
|||||||||||| |||||||||||||| | | | |||| |||||||||||||||||||
Sbjct: 90 tagtactccctccgtaaactaatataatagcgtttaga--actattttagttatctaaac 33
Query: 62 gctcgtgtattagtttgcagagggagtac 90
||| | ||||||||| ||||||||||||
Sbjct: 32 actcttatattagtttacagagggagtac 4
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 tagtactccctctgtaaactaatataaga 30
|||||||||||||||||||||||||||||
Sbjct: 2 tagtactccctctgtaaactaatataaga 30
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 75.8 bits (38), Expect = 9e-14
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
|||||||||||||||||||||||| | | | ||||||||||||||| | ||||||| |||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttagatcactattttaataatctaaatgct 64
Query: 65 cgtgtattagtttgcagagggagtac 90
| | ||||||||| ||||||||||
Sbjct: 65 cttatattagtttatggagggagtac 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 4 gtactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagc 63
|||||||||| ||||||||||||||| | | ||||| | || |||| ||||||| ||
Sbjct: 90 gtactccctccataaactaatataagagcatttagattattaaaatagtgatctaaatgc 31
Query: 64 tcgtgtattagtttgcagagggagta 89
| | ||||||||| |||||||||||
Sbjct: 30 ttttatattagtttacagagggagta 5
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 75.8 bits (38), Expect = 9e-14
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 15 gtaaactaatataagatcttgtagatcactattttagttatctaaaagctcgtgtattag 74
|||||||||||||||| | | |||| |||||||||||| ||||||| ||| | ||||||
Sbjct: 79 gtaaactaatataagagcatttagaacactattttagtaatctaaatactcttatattag 20
Query: 75 tttgcagagggagtacat 92
||| ||||||||||||||
Sbjct: 19 tttacagagggagtacat 2
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 4 gtactccctctgtaaactaatataaga 30
|||||||||||||||||||||||||||
Sbjct: 4 gtactccctctgtaaactaatataaga 30
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 75.8 bits (38), Expect = 9e-14
Identities = 77/89 (86%), Gaps = 2/89 (2%)
Strand = Plus / Minus
Query: 2 tagtactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaa 61
|||||||||||| |||||||||||||||| | | |||| |||||||||||||||||||
Sbjct: 90 tagtactccctccgtaaactaatataagagcgtttaga--actattttagttatctaaac 33
Query: 62 gctcgtgtattagtttgcagagggagtac 90
|| | ||||||||| ||||||||||||
Sbjct: 32 acttttatattagtttacagagggagtac 4
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 2 tagtactccctctgtaaactaatataa 28
|||||||||||||||||||||||||||
Sbjct: 2 tagtactccctctgtaaactaatataa 28
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 75/88 (85%)
Strand = Plus / Minus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
||||||||| |||||||||||||||| | | |||| |||||||||||| ||||||| ||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaacact 30
Query: 65 cgtgtattagtttgcagagggagtacat 92
| | |||| |||| |||||||||||||
Sbjct: 29 cttatattggtttatagagggagtacat 2
Score = 44.1 bits (22), Expect = 3e-04
Identities = 70/86 (81%)
Strand = Plus / Plus
Query: 4 gtactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagc 63
||||||||||| ||||| ||||||||| | |||||||||| |||| |||||| ||
Sbjct: 4 gtactccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgc 63
Query: 64 tcgtgtattagtttgcagagggagta 89
|| | ||||||||| | |||||||||
Sbjct: 64 tcttatattagtttacggagggagta 89
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 10 cctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagctcgtgt 69
|||| |||||||||||||||| | | ||||||||||||||||| ||| ||| |||| | |
Sbjct: 84 cctccgtaaactaatataagagcgtttagatcactattttagtgatccaaacgctcttat 25
Query: 70 attagtttgcagagggagta 89
|||| ||| |||||||||||
Sbjct: 24 attaatttacagagggagta 5
Score = 50.1 bits (25), Expect = 5e-06
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
||||||||||||||| |||||||||| | | | |||||||| |||| ||||||| |||
Sbjct: 5 tactccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgct 64
Query: 65 cgtgtattagttt 77
| | |||||||||
Sbjct: 65 cttatattagttt 77
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 69.9 bits (35), Expect = 5e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 3 agtactccctctgtaaactaatataagatcttgtagatcacta 45
|||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 3 agtactccctctgtaaactaatataagagcttttagatcacta 45
Score = 69.9 bits (35), Expect = 5e-12
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 36 tagatcactattttagttatctaaaagctcgtgtattagtttgcagagggagtac 90
|||||||||| |||||| |||||||||||| | ||||||||| ||||||||||||
Sbjct: 58 tagatcactactttagtgatctaaaagctcttatattagtttacagagggagtac 4
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 65.9 bits (33), Expect = 8e-11
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 4 gtactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagc 63
|||||||||| ||||| |||||||||| | | ||||||||||||||| ||||||| ||
Sbjct: 4 gtactccctccgtaaattaatataagagtgttttgatcactattttagtgatctaaacgc 63
Query: 64 tcgtgtattagtttgcagagggagt 88
|| | ||||||||| | ||||||||
Sbjct: 64 tcttatattagtttactgagggagt 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 6 actccctctgtaaactaatataagatcttgtagatcacta 45
|||||||| |||||||||||||||| | | ||||||||||
Sbjct: 88 actccctcagtaaactaatataagagcgtttagatcacta 49
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 65.9 bits (33), Expect = 8e-11
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
|||||||||||||||||||||||||| | | ||||||||| |||||| ||||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgct 64
Query: 65 c 65
|
Sbjct: 65 c 65
Score = 50.1 bits (25), Expect = 5e-06
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
||||||||| ||||| ||||||||| | | |||||||||| |||| |||| || |||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgct 30
Query: 65 cgtgtattagtttgcagagggagta 89
| | ||||||||| |||||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 65.9 bits (33), Expect = 8e-11
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
||||||||| |||||||||||||||| | ||||||||||||||| | || |||| |||
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgct 64
Query: 65 cgtgtattagtttgcagagggagta 89
| | ||||||||| | |||||||||
Sbjct: 65 cttatattagtttaccgagggagta 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 5 tactccctctgtaaactaatataaga 30
||||||||| ||||||||||||||||
Sbjct: 89 tactccctcggtaaactaatataaga 64
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 65.9 bits (33), Expect = 8e-11
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 1 ttagtactccctctgtaaactaatataagatcttgtagatcacta 45
|||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 92 ttagtactccctctgtaaactaatataagagcatttagatcacta 48
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 49 tagttatctaaaagctcgtgtattagtttgcagagggagtac 90
|||| ||||||| |||| | ||||||||| ||||||||||||
Sbjct: 48 tagtgatctaaatgctcttatattagtttacagagggagtac 89
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
||||||||| |||||||||||||||| | ||||| |||| |||||| ||||||| | |
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagattactactttagtgatctaaatgtt 64
Query: 65 cgtgtattagtttgcagagggagtaca 91
| ||||||||| |||||||||||||
Sbjct: 65 tttatattagtttacagagggagtaca 91
Score = 60.0 bits (30), Expect = 5e-09
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 4 gtactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagc 63
||||||||||||||||||||||||| | | | |||||||||| |||| ||||||| |
Sbjct: 90 gtactccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaacac 31
Query: 64 tcgtgtattagtttgcagagggagta 89
|| | ||||||||| | |||||||||
Sbjct: 30 tcttatattagtttacggagggagta 5
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 61.9 bits (31), Expect = 1e-09
Identities = 76/90 (84%), Gaps = 7/90 (7%)
Strand = Plus / Minus
Query: 3 agtactccctctgtaaactaatataaga-----tcttgtaga--tcactattttagttat 55
|||||||||||||||||||||||||||| || | |||| ||||||||||||| ||
Sbjct: 98 agtactccctctgtaaactaatataagagcgtttcatttagatctcactattttagtgat 39
Query: 56 ctaaaagctcgtgtattagtttgcagaggg 85
||||| |||| | ||||||||| |||||||
Sbjct: 38 ctaaatgctcttatattagtttacagaggg 9
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 9 ccctctgtaaactaatataagatcttgtagatcacta 45
|||||||||||||||||||||| | | ||||||||||
Sbjct: 9 ccctctgtaaactaatataagagcatttagatcacta 45
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 19 actaatataagatcttgtagatcactattttagttatctaaaagctcgtgtattagtttg 78
|||||||||||| | | ||||||||||||||| | ||||||| |||| | |||||||||
Sbjct: 64 actaatataagagcgtttagatcactattttaatgatctaaatgctcttatattagttta 123
Query: 79 cagagggagta 89
| |||||||||
Sbjct: 124 cggagggagta 134
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 3 agtactccctctgtaaactaatataaga 30
||||||||||||||||||||||||||||
Sbjct: 3 agtactccctctgtaaactaatataaga 30
Score = 46.1 bits (23), Expect = 8e-05
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
||||||||| |||||||||||||||| | | ||||||| || |||| ||||||| |||
Sbjct: 134 tactccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgct 75
Query: 65 cgtgtattagt 75
| | |||||||
Sbjct: 74 cttatattagt 64
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 56.0 bits (28), Expect = 8e-08
Identities = 70/84 (83%)
Strand = Plus / Minus
Query: 3 agtactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaag 62
|||||||||| ||||||||||||||| | | | ||||||| || |||||| |||||| |
Sbjct: 91 agtactccctttgtaaactaatataaaagcatttagatcattactttagtattctaaacg 32
Query: 63 ctcgtgtattagtttgcagaggga 86
||| | ||||||||| | ||||||
Sbjct: 31 ctcttatattagtttacggaggga 8
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 56.0 bits (28), Expect = 8e-08
Identities = 73/88 (82%)
Strand = Plus / Minus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
||||||||| |||||||||||||| || | || | || ||||||||| || |||| |||
Sbjct: 89 tactccctccgtaaactaatataaaattatttaaaacattattttagtaatttaaatgct 30
Query: 65 cgtgtattagtttgcagagggagtacat 92
| ||||||||| ||||||||||||||
Sbjct: 29 tttatattagtttacagagggagtacat 2
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 4 gtactccctctgtaaactaatataa 28
|||||||||||||||||||||||||
Sbjct: 4 gtactccctctgtaaactaatataa 28
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 56.0 bits (28), Expect = 8e-08
Identities = 68/80 (85%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
||||||||| |||||||||||||||| | | |||||||||| ||||| ||||||| |||
Sbjct: 87 tactccctccgtaaactaatataagagcatttagatcacta-cttagtgatctaaatgct 29
Query: 65 cgtgtattagtttgcagagg 84
| ||||||||| ||||||
Sbjct: 28 tttatattagtttacagagg 9
Score = 50.1 bits (25), Expect = 5e-06
Identities = 75/89 (84%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 ttagtactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaa 60
|||||||||| ||||||||||||||||| | | | |||||||||| |||| |||||||
Sbjct: 1 ttagtactcc-tctgtaaactaatataaaagcatttagatcacta-agtagtgatctaaa 58
Query: 61 agctcgtgtattagtttgcagagggagta 89
|||| | ||||||||| | |||||||||
Sbjct: 59 tgctcttatattagtttacggagggagta 87
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 56.0 bits (28), Expect = 8e-08
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaa 60
||||||||||||||| ||||||||||| | ||||| |||| |||||| |||||||
Sbjct: 89 tactccctctgtaaagaaatataagatcatttagataactactttagtgatctaaa 34
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 56.0 bits (28), Expect = 8e-08
Identities = 73/88 (82%)
Strand = Plus / Minus
Query: 3 agtactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaag 62
|||| |||||| ||||| ||||||||| | | |||||||||||||||| ||||||| |
Sbjct: 91 agtagtccctcagtaaagaaatataagagcgtttagatcactattttagagatctaaacg 32
Query: 63 ctcgtgtattagtttgcagagggagtac 90
| | | |||| |||| ||||||||||||
Sbjct: 31 cccttatatttgtttacagagggagtac 4
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 tagtactccctctgtaaactaatataag 29
||||||||||||||||||| ||||||||
Sbjct: 2 tagtactccctctgtaaacaaatataag 29
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 5 tactccctctgtaaactaatataaga 30
||||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataaga 30
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 5 tactccctctgtaaactaatataaga 30
||||||||| ||||||||||||||||
Sbjct: 62 tactccctccgtaaactaatataaga 37
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 5 tactccctctgtaaactaatataaga 30
||||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataaga 30
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 4 gtactccctctgtaaactaatataaga 30
|||||||||| ||||||||||||||||
Sbjct: 75 gtactccctcggtaaactaatataaga 49
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 6 actccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagctc 65
|||||||| |||||||||||||||| | |||||||| |||||| | |||| || ||||
Sbjct: 88 actccctccgtaaactaatataagagagtttagatcacaattttaatgatctcaacgctc 29
Query: 66 gtgtattagtttgcagaggga 86
| ||||||||| || |||||
Sbjct: 28 ttatattagtttacaaaggga 8
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcacta 45
||||||||||||||| ||||||||||| | ||||||||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttagatcacta 45
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
||||||||| ||||||||||||||| | | |||| ||||| || ||| ||||||| | |
Sbjct: 89 tactccctccataaactaatataagagcatttagaacactacttcagtaatctaaatgtt 30
Query: 65 cgtgtattagtttgcagagggagta 89
| | ||||||||| | |||||||||
Sbjct: 29 cttatattagtttacggagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 tactccctctgtaaactaatataaga 30
||||||||| ||||||||||||||||
Sbjct: 5 tactccctccgtaaactaatataaga 30
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 4 gtactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaa 60
|||||||||||||||| ||||||||| | |||||||||| |||||| |||||||
Sbjct: 88 gtactccctctgtaaagaaatataagagtgtttagatcactactttagtgatctaaa 32
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 5 tactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaagct 64
|||||| ||||||||||| ||||||| | | |||||||||| |||| ||||||| |||
Sbjct: 89 tactccgtctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacgct 30
Query: 65 cgtgtattagtttgcagagggagta 89
| | ||||| ||| | |||||||||
Sbjct: 29 cttatattaatttacggagggagta 5
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 7 ctccctctgtaaactaatataagatcttgtagatcactat 46
||||||||||||| ||||||||||| | |||||||||||
Sbjct: 76 ctccctctgtaaagaaatataagatcatttagatcactat 37
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 3 agtactccctctgtaaactaatataagatcttgtagatcactat 46
||||||||||||||||| ||||||||| | | |||||||||||
Sbjct: 85 agtactccctctgtaaagaaatataagagcgtttagatcactat 42
>RF00906;MIR1122;AJ313099.1/1401-1309 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 3 agtactccctctgtaaactaatataagatcttgtagatcactattttagt 52
||||||||||||||||||| |||||||| || ||| ||||| ||||||
Sbjct: 3 agtactccctctgtaaacttttataagatgttttaggccactactttagt 52
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 73/90 (81%)
Strand = Plus / Plus
Query: 3 agtactccctctgtaaactaatataagatcttgtagatcactattttagttatctaaaag 62
||||||||||| ||||| ||||||||| | | |||| ||||| |||||||||||| |
Sbjct: 3 agtactccctcggtaaagaaatataagagcgtttagagcactaaagtagttatctaaatg 62
Query: 63 ctcgtgtattagtttgcagagggagtacat 92
||| | |||| ||| |||||||||||||
Sbjct: 63 ctcttatatttctttatagagggagtacat 92
