miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU626553.1/45919-45827 4572:Triticum urartu
Length = 93
Score = 69.9 bits (35), Expect = 7e-12
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 33 aatataagacgtttttatagttcaatttgaactgcaaaaacatctta 79
|||||||||||||||| |||||||| ||||||||||||||| |||||
Sbjct: 22 aatataagacgtttttgtagttcaaattgaactgcaaaaacgtctta 68
Score = 61.9 bits (31), Expect = 2e-09
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 33 aatataagacgtttttatagttcaatttgaactgcaaaaacatctta 79
|||||||||||||||| ||||||||||||||| ||||||| |||||
Sbjct: 72 aatataagacgtttttgcagttcaatttgaactacaaaaacgtctta 26
>RF00906;MIR1122;AF306827.1/682-774 4568:Triticum monococcum
Length = 93
Score = 69.9 bits (35), Expect = 7e-12
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 33 aatataagacgtttttatagttcaatttgaactgcaaaaacatctta 79
|||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 72 aatataagacgtttttgcagttcaatttgaactgcaaaaacgtctta 26
Score = 61.9 bits (31), Expect = 2e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 33 aatataagacgtttttatagttcaatttgaactgcaaaaacatctta 79
|||||||||||||||| ||||||| ||||||||||||||| |||||
Sbjct: 22 aatataagacgtttttgcagttcaaattgaactgcaaaaacgtctta 68
>RF00906;MIR1122;FM242578.1/62810-62698 4565:Triticum aestivum
(bread wheat)
Length = 113
Score = 50.1 bits (25), Expect = 6e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 33 aatataagacgtttttatagttcaatttgaactgcaaaaac 73
|||||||||||||||| ||||||| |||||||||||||||
Sbjct: 92 aatataagacgtttttgcagttcaa-ttgaactgcaaaaac 53
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 21 cctctgtaaactaatataagacgtttt 47
|||||||||||||||||||||| ||||
Sbjct: 10 cctctgtaaactaatataagacctttt 36
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 21 cctctgtaaactaatataagacgtttt 47
|||||||||||||||||||||| ||||
Sbjct: 84 cctctgtaaactaatataagacctttt 58
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 21 cctctgtaaactaatataagacgtttt 47
|||||||||||||||||||||| ||||
Sbjct: 10 cctctgtaaactaatataagacctttt 36
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 21 cctctgtaaactaatataagacgtttt 47
|||||||||||||||||||||| ||||
Sbjct: 86 cctctgtaaactaatataagacctttt 60
