miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 119 bits (60), Expect = 8e-27
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 15 gtacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgc 74
||||| ||||| ||||| |||||||||||||||||||||||||| ||||| || ||||||
Sbjct: 4 gtactccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgc 63
Query: 75 tctcatattagtttacggagggagtagt 102
||| ||||||||||||||||||||||||
Sbjct: 64 tcttatattagtttacggagggagtagt 91
Score = 65.9 bits (33), Expect = 1e-10
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| |||| ||||||||||||||||| ||||||| ||||| |||||||| |||| ||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaacact 30
Query: 76 ctcatattagtttacggagggagta 100
|| ||||| ||||| |||||||||
Sbjct: 29 cttatattggtttatagagggagta 5
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 113 bits (57), Expect = 5e-25
Identities = 78/85 (91%)
Strand = Plus / Minus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| |||||||||||||||||||||| | |||||||||||||||||||||| || ||||
Sbjct: 89 tactccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgct 30
Query: 76 ctcatattagtttacggagggagta 100
|| |||||||||||| |||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
Score = 91.7 bits (46), Expect = 2e-18
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| |||||||||||||||||||||| | ||||||||||| |||||||| || ||||
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgct 64
Query: 76 ctcatattagtttacggagggagtag 101
|| |||||||||||| ||||||||||
Sbjct: 65 cttatattagtttacagagggagtag 90
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 113 bits (57), Expect = 5e-25
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| |||||||||||||||||||||| |||||||||||||| |||| ||| |||||||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgct 64
Query: 76 ctcatattagtttacggagggagta 100
|| ||||||||||||||||||||||
Sbjct: 65 cttatattagtttacggagggagta 89
Score = 81.8 bits (41), Expect = 2e-15
Identities = 74/85 (87%)
Strand = Plus / Minus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| |||| ||||||||||||||||| |||||||| |||| |||||||| ||| |||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgct 30
Query: 76 ctcatattagtttacggagggagta 100
|| |||||||||||| |||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 111 bits (56), Expect = 2e-24
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgct 64
Query: 76 ctcatattagtt 87
|| |||||||||
Sbjct: 65 cttatattagtt 76
Score = 87.7 bits (44), Expect = 3e-17
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 29 aactaatataagagtgtttagatcactaaagtagtgatccaaacgctctcatattagttt 88
|||||||||||||| ||||||||||||| |||||||| ||||||||| ||||||||||
Sbjct: 76 aactaatataagagcgtttagatcactactttagtgatctaaacgctcttatattagttt 17
Query: 89 acggagggagta 100
|| |||||||||
Sbjct: 16 acagagggagta 5
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 107 bits (54), Expect = 3e-23
Identities = 72/78 (92%)
Strand = Plus / Minus
Query: 23 tctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgctctcatat 82
||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||| ||||
Sbjct: 82 tctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacgctcttatat 23
Query: 83 tagtttacggagggagta 100
|| |||||||||||||||
Sbjct: 22 taatttacggagggagta 5
Score = 67.9 bits (34), Expect = 3e-11
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| |||| ||||| ||||||||||| |||||||| |||| |||||||| |||||||
Sbjct: 5 tactccctccgtaaattaatataagagcgtttagattactactttagtgatctaaacgct 64
Query: 76 ctcatattagtttacggagggagtag 101
|| ||| |||||||| || |||||||
Sbjct: 65 cttatagtagtttacagacggagtag 90
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 105 bits (53), Expect = 1e-22
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 12 aaagtacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaa 71
|||| ||| |||| ||||||||||||||||| ||||||||||||||| |||||||| |||
Sbjct: 93 aaagcactccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaa 34
Query: 72 cgctctcatattagtttacggagggagta 100
| |||| |||||| |||||||||||||||
Sbjct: 33 cactcttatattaatttacggagggagta 5
Score = 89.7 bits (45), Expect = 7e-18
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 15 gtacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgc 74
||||| |||| ||||| |||||||||||||||| |||||||| |||||||| ||||||
Sbjct: 4 gtactccctccgtaaattaatataagagtgttttgatcactattttagtgatctaaacgc 63
Query: 75 tctcatattagtttacggagggagt 99
||| |||||||||||| ||||||||
Sbjct: 64 tcttatattagtttactgagggagt 88
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 105 bits (53), Expect = 1e-22
Identities = 77/85 (90%)
Strand = Plus / Minus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
||||||||||||||||||||||||||| |||||||||||| |||||| | |||||||
Sbjct: 89 tacttcctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgct 30
Query: 76 ctcatattagtttacggagggagta 100
|| ||||||||||||||||||||||
Sbjct: 29 cttatattagtttacggagggagta 5
Score = 93.7 bits (47), Expect = 5e-19
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 14 agtacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacg 73
|||||| |||| ||||||||||||||||| |||||| |||||||| |||||||| ||| |
Sbjct: 3 agtactccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatg 62
Query: 74 ctctcatattagtttacggagggagta 100
|||| |||||||||||| |||| ||||
Sbjct: 63 ctcttatattagtttacagaggaagta 89
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 105 bits (53), Expect = 1e-22
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 14 agtacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacg 73
|||||| |||||||||||||||||||||| ||||||||||||| |||| || |||||
Sbjct: 3 agtactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacg 62
Query: 74 ctctcatattagtttacggagggagtagt 102
|||| ||||||||||||||||||||||||
Sbjct: 63 ctcttatattagtttacggagggagtagt 91
Score = 97.6 bits (49), Expect = 3e-20
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| |||| ||||||||||||||||| ||||||| |||||| |||||||| |||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgct 30
Query: 76 ctcatattagtttacggagggagta 100
|| |||||||||||| |||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 103 bits (52), Expect = 5e-22
Identities = 79/87 (90%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 14 agtacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacg 73
|||||| ||||||||||||||||||||||||||||||| |||||| |||| || |||||
Sbjct: 3 agtactccctctgtaaactaatataagagtgtttagataactaaaatagt--tctaaacg 60
Query: 74 ctctcatattagtttacggagggagta 100
|| | ||||||||||||||||||||||
Sbjct: 61 ctattatattagtttacggagggagta 87
Score = 56.0 bits (28), Expect = 1e-07
Identities = 73/87 (83%), Gaps = 2/87 (2%)
Strand = Plus / Minus
Query: 14 agtacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacg 73
|||||| |||| |||||||||||||| || ||||||| |||| |||| ||| ||||
Sbjct: 89 agtactccctccgtaaactaatataatagcgtttaga--actattttagttatctaaaca 32
Query: 74 ctctcatattagtttacggagggagta 100
|||| |||||||||||| |||||||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 103 bits (52), Expect = 5e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| |||||||||| ||||||||||| |||| |||||||||| |||||||| |||||||
Sbjct: 5 tactccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgct 64
Query: 76 ctcatattagtttacggagg 95
|| |||||||||||||||||
Sbjct: 65 cttatattagtttacggagg 84
Score = 97.6 bits (49), Expect = 3e-20
Identities = 73/81 (90%)
Strand = Plus / Minus
Query: 21 cctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgctctcat 80
|||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| ||
Sbjct: 84 cctccgtaaactaatataagagcgtttagatcactattttagtgatccaaacgctcttat 25
Query: 81 attagtttacggagggagtag 101
|||| ||||| ||||||||||
Sbjct: 24 attaatttacagagggagtag 4
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 103 bits (52), Expect = 5e-22
Identities = 79/87 (90%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 14 agtacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacg 73
|||||| ||||||||||||||||||| ||||||||||| |||||| |||| || |||||
Sbjct: 3 agtactccctctgtaaactaatataaaagtgtttagataactaaaatagt--tctaaacg 60
Query: 74 ctctcatattagtttacggagggagta 100
|||| ||||||||||||||||||||||
Sbjct: 61 ctcttatattagtttacggagggagta 87
Score = 56.0 bits (28), Expect = 1e-07
Identities = 73/87 (83%), Gaps = 2/87 (2%)
Strand = Plus / Minus
Query: 14 agtacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacg 73
|||||| |||| ||||||||||||||||| ||||||| |||| |||| ||| ||||
Sbjct: 89 agtactccctccgtaaactaatataagagcgtttaga--actattttagttatctaaaca 32
Query: 74 ctctcatattagtttacggagggagta 100
|| | |||||||||||| |||||||||
Sbjct: 31 cttttatattagtttacagagggagta 5
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 101 bits (51), Expect = 2e-21
Identities = 76/83 (91%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 20 tcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgctctca 79
|||||||||||||||||||| || ||||||||||||| ||||||||| ||| ||||| |
Sbjct: 8 tcctctgtaaactaatataaaagcatttagatcactaa-gtagtgatctaaatgctctta 66
Query: 80 tattagtttacggagggagtagt 102
|||||||||||||||||||||||
Sbjct: 67 tattagtttacggagggagtagt 89
Score = 56.0 bits (28), Expect = 1e-07
Identities = 68/80 (85%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| |||| ||||||||||||||||| ||||||||||| | |||||||| ||| |||
Sbjct: 87 tactccctccgtaaactaatataagagcatttagatcact-acttagtgatctaaatgct 29
Query: 76 ctcatattagtttacggagg 95
| |||||||||||| ||||
Sbjct: 28 tttatattagtttacagagg 9
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 99.6 bits (50), Expect = 8e-21
Identities = 77/86 (89%)
Strand = Plus / Minus
Query: 15 gtacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgc 74
||||| ||||||||||||||||||| | ||||||||||||||||||| ||| |||| |
Sbjct: 90 gtactccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaacac 31
Query: 75 tctcatattagtttacggagggagta 100
||| ||||||||||||||||||||||
Sbjct: 30 tcttatattagtttacggagggagta 5
Score = 73.8 bits (37), Expect = 4e-13
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| |||| |||||||||||||||||||||||||| |||| |||||||| ||| | |
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagattactactttagtgatctaaatgtt 64
Query: 76 ctcatattagtttacggagggagta 100
| |||||||||||| |||||||||
Sbjct: 65 tttatattagtttacagagggagta 89
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 95.6 bits (48), Expect = 1e-19
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 21 cctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgctctcat 80
||||||||||||||||||||| ||||||||||||||||||||||| ||| | ||| ||
Sbjct: 10 cctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtcttat 69
Query: 81 attagtttacggagggagta 100
|||||||||| |||||||||
Sbjct: 70 attagtttacagagggagta 89
Score = 69.9 bits (35), Expect = 7e-12
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 15 gtacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgc 74
||||| ||||||||||||||||||||| |||||||||||| |||||||| ||| |
Sbjct: 90 gtactccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaagg 31
Query: 75 tctcatattagtttacggaggga 97
||| |||||||||||| ||||||
Sbjct: 30 tcttatattagtttacagaggga 8
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 93.7 bits (47), Expect = 5e-19
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 15 gtacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgc 74
||||| ||||||||||||||||||||||| ||||||| |||||| ||||| || ||| ||
Sbjct: 4 gtactccctctgtaaactaatataagagtatttagattactaaaatagtgttctaaatgc 63
Query: 75 tctcatattagtttacggaggga 97
||| ||||||||||||| |||||
Sbjct: 64 tcttatattagtttacgaaggga 86
Score = 54.0 bits (27), Expect = 4e-07
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 26 gtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgctctcatattag 85
||||||||||||||||| |||||| ||||| |||| ||| ||| |||| |||||||
Sbjct: 79 gtaaactaatataagagcatttagaacactattttagtaatctaaatactcttatattag 20
Query: 86 tttacggagggagta 100
||||| |||||||||
Sbjct: 19 tttacagagggagta 5
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 91.7 bits (46), Expect = 2e-18
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| |||| ||||||||||||||||| |||| |||| |||| |||||||| |||| ||
Sbjct: 89 tactccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaacact 30
Query: 76 ctcatattagtttacggagggagtag 101
|| |||||||||||||||||||||||
Sbjct: 29 cttatattagtttacggagggagtag 4
Score = 85.7 bits (43), Expect = 1e-16
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| |||| ||||||||||||||||||||||||||||||| || |||| ||| |||
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgct 64
Query: 76 ctcatattagtttacggagggagtagt 102
|| |||||||||||| |||||||||||
Sbjct: 65 cttatattagtttaccgagggagtagt 91
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 89.7 bits (45), Expect = 7e-18
Identities = 75/85 (88%)
Strand = Plus / Minus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| ||||||||||||||||||| ||| |||| || |||||| |||||||| |||| ||
Sbjct: 89 tactccctctgtaaactaatataaaagtttttaaattactaaactagtgatctaaacact 30
Query: 76 ctcatattagtttacggagggagta 100
|| |||||||||||| |||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
Score = 79.8 bits (40), Expect = 7e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 13 aagtacttcctctgtaaactaatataagagtgtttagatcacta 56
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2 aagtactccctctgtaaactaatataagagtgtttagatcacta 45
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 89.7 bits (45), Expect = 7e-18
Identities = 82/95 (86%), Gaps = 7/95 (7%)
Strand = Plus / Plus
Query: 13 aagtacttcctctgtaaactaatataagagtgtttagatcactaaagtagtga------- 65
||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2 aagtactccctctgtaaactaatataagagcttttagatcactaaagtagtgatctaaag 61
Query: 66 tccaaacgctctcatattagtttacggagggagta 100
|| ||||||||| ||||||||||| ||||||||||
Sbjct: 62 tctaaacgctcttatattagtttaaggagggagta 96
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 45 tttagatcactaaagtagtgatccaaacgctctcatattagtttacggagggagta 100
|||||||||||| |||||||| ||| ||||| |||||||||||| |||||||||
Sbjct: 60 tttagatcactactttagtgatctaaaagctcttatattagtttacagagggagta 5
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 89.7 bits (45), Expect = 7e-18
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| |||||||||||||||||||||| |||||||| |||||||||||| || ||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatgct 64
Query: 76 ctcatattagtttacggagggagta 100
| |||||||||||| | |||||||
Sbjct: 65 tttatattagtttacagggggagta 89
Score = 79.8 bits (40), Expect = 7e-15
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 13 aagtacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaac 72
||||||| || |||||||||||||||| || |||||| ||||| |||| ||| ||||
Sbjct: 92 aagtactccccctgtaaactaatataaaagcatttagaacactactttagtaatctaaac 33
Query: 73 gctctcatattagtttacggagggagtagtac 104
||||| |||||||||||| |||||||||||||
Sbjct: 32 gctcttatattagtttacagagggagtagtac 1
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 25 tgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgctctcatatta 84
|||||||||||||||||| ||| |||||| |||| | |||||| |||| |||| ||||||
Sbjct: 14 tgtaaactaatataagagcgttgagatcattaaaattgtgatctaaactctcttatatta 73
Query: 85 gtttacggagggagt 99
|||||||||||||||
Sbjct: 74 gtttacggagggagt 88
Score = 61.9 bits (31), Expect = 2e-09
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 21 cctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgctctcat 80
|||| ||||||||||||||||| ||||||||||| | || ||||| |||||||| ||
Sbjct: 84 cctccgtaaactaatataagagagtttagatcacaattttaatgatctcaacgctcttat 25
Query: 81 attagtttacggagggagtagta 103
|||||||||| ||||| |||||
Sbjct: 24 attagtttacaaagggaatagta 2
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 83.8 bits (42), Expect = 5e-16
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 15 gtacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgc 74
||||| |||| |||||||||||||| || ||||||| |||||| |||||||| |||||
Sbjct: 4 gtactccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaacgt 63
Query: 75 tctcatattagtttacggagggagta 100
||| |||||||||||| |||||||||
Sbjct: 64 tcttatattagtttacagagggagta 89
Score = 81.8 bits (41), Expect = 2e-15
Identities = 74/85 (87%)
Strand = Plus / Minus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| ||||||||||||||||||||| ||||||||||||| |||| || |||||||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcactattttagtattctaaacgct 30
Query: 76 ctcatattagtttacggagggagta 100
| ||||||||||||||||||||||
Sbjct: 29 tttatattagtttacggagggagta 5
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 83.8 bits (42), Expect = 5e-16
Identities = 54/58 (93%)
Strand = Plus / Minus
Query: 33 aatataagagtgtttagatcactaaagtagtgatccaaacgctctcatattagtttac 90
||||||||||||| ||||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct: 72 aatataagagtgtctagatcactaaagtagtgatctaaacgctcttatatttgtttac 15
Score = 58.0 bits (29), Expect = 3e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 12 aaagtacttcctctgtaaactaatataagagtgtttagatcacta 56
|||| |||| |||||||||| |||||||||| |||||||||||||
Sbjct: 1 aaaggacttgctctgtaaacaaatataagagcgtttagatcacta 45
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 74/85 (87%)
Strand = Plus / Minus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| |||| ||||| |||||||||| ||||||||||||||||||||||| || |||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgct 30
Query: 76 ctcatattagtttacggagggagta 100
|| |||||||||||| |||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
Score = 73.8 bits (37), Expect = 4e-13
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| |||||||||||||||||||||| || ||||||||| |||||||| ||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgct 64
Query: 76 ctcatattagtttacggagggagta 100
|| ||||| |||||||||||||||
Sbjct: 65 cttatatttctttacggagggagta 89
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| |||||||||| |||||||||| |||||||||||| ||||||||||| |||||||
Sbjct: 5 tactacctctgtaaagaaatataagagcgtttagatcactgaagtagtgatctaaacgct 64
Query: 76 ctcatattagtttacggaggg 96
|| ||||| ||||| |||||
Sbjct: 65 cttatatttctttacagaggg 85
Score = 61.9 bits (31), Expect = 2e-09
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 21 cctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgctctcat 80
|||||||||| |||||||||| ||||||||||||| ||||||| ||||||||| ||
Sbjct: 84 cctctgtaaagaaatataagagcgtttagatcactacttcagtgatctaaacgctcttat 25
Query: 81 attagtttacggagggagtagta 103
||| ||||| |||| |||||||
Sbjct: 24 atttctttacagaggtagtagta 2
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 79.8 bits (40), Expect = 7e-15
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 23 tctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgctctcatat 82
|||||||| |||||||||| || ||||||||||||||||| ||| |||| |||| ||||
Sbjct: 12 tctgtaaagaaatataagagcgtctagatcactaaagtagttatctaaacactcttatat 71
Query: 83 tagtttacggagggagtagt 102
| |||||||||||||||||
Sbjct: 72 ttctttacggagggagtagt 91
Score = 50.1 bits (25), Expect = 6e-06
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| |||| ||||| ||||||||||||||||||| |||| |||||||| | |||||
Sbjct: 89 tactccctccgtaaagaaatataagagtgtttagataactactttagtgatctagacgct 30
Query: 76 ctcatattagtttacggagggagta 100
|| ||||| ||||| || ||||||
Sbjct: 29 cttatatttctttacagaaggagta 5
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 79.8 bits (40), Expect = 7e-15
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 14 agtacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacg 73
|||||| ||||||||||| |||||||| | ||||||||| ||||| |||||||| |||||
Sbjct: 3 agtactccctctgtaaacaaatataagggcgtttagatctctaaaatagtgatctaaacg 62
Query: 74 ctctcatattagtttacggaggga 97
|||| ||||| ||||| ||||||
Sbjct: 63 ctcttatatttctttactgaggga 86
Score = 56.0 bits (28), Expect = 1e-07
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 33 aatataagagtgtttagatcactaaagtagtgatccaaacgctctcatattagtttacgg 92
|||||||||| ||||||||||||| ||| |||| |||||| || ||||| |||||| |
Sbjct: 72 aatataagagcgtttagatcactattttagagatctaaacgcccttatatttgtttacag 13
Query: 93 agggagta 100
||||||||
Sbjct: 12 agggagta 5
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum (bread
wheat)
Length = 92
Score = 77.8 bits (39), Expect = 3e-14
Identities = 66/75 (88%)
Strand = Plus / Minus
Query: 26 gtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgctctcatattag 85
|||||| |||||||||| ||| |||||||| ||||||||| | ||||||||| |||||
Sbjct: 79 gtaaacaaatataagagcgttcagatcactcaagtagtgacctaaacgctcttatatttc 20
Query: 86 tttacggagggagta 100
|||||||||||||||
Sbjct: 19 tttacggagggagta 5
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 77.8 bits (39), Expect = 3e-14
Identities = 72/82 (87%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 21 cctctgtaaactaatataagagtgtttagatcactaa--agtagtgatccaaacgctctc 78
||||||||||||||||||||| ||||||||||||| |||||||||| ||| | |||
Sbjct: 10 cctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaaaggtctt 69
Query: 79 atattagtttacggagggagta 100
|||||||||||| |||||||||
Sbjct: 70 atattagtttacagagggagta 91
Score = 60.0 bits (30), Expect = 7e-09
Identities = 72/85 (84%), Gaps = 2/85 (2%)
Strand = Plus / Minus
Query: 15 gtacttcctctgtaaactaatataagagtgtttagatcacta--aagtagtgatccaaac 72
||||| ||||||||||||||||||||| |||||||||||| | |||||||| |||
Sbjct: 92 gtactccctctgtaaactaatataagaccttttagatcactactacttagtgatctaaaa 33
Query: 73 gctctcatattagtttacggaggga 97
| ||| |||||||||||| ||||||
Sbjct: 32 ggtcttatattagtttacagaggga 8
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 77.8 bits (39), Expect = 3e-14
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| |||| ||||||||||||||||| ||||||||| |||| |||||||| |||||||
Sbjct: 134 tactccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgct 75
Query: 76 ctcatattagt 86
|| ||||||||
Sbjct: 74 cttatattagt 64
Score = 77.8 bits (39), Expect = 3e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 30 actaatataagagtgtttagatcactaaagtagtgatccaaacgctctcatattagttta 89
||||||||||||| ||||||||||||| || ||||| ||| ||||| |||||||||||
Sbjct: 64 actaatataagagcgtttagatcactattttaatgatctaaatgctcttatattagttta 123
Query: 90 cggagggagta 100
|||||||||||
Sbjct: 124 cggagggagta 134
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 13 aagtacttcctctgtaaactaatataagagtgtttag 49
||||||| |||||||||||||||||||||| ||||||
Sbjct: 2 aagtactccctctgtaaactaatataagagcgtttag 38
Score = 54.0 bits (27), Expect = 4e-07
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 42 gtgtttagatcactaaagtagtgatccaaacgctctcatattagtttacggagggagta 100
|||||||||||| |||| | ||| | ||||||||| |||||||||||| |||||||||
Sbjct: 63 gtgtttagatcattaaaattatgacctaaacgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 75.8 bits (38), Expect = 1e-13
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 27 taaactaatataagagtgtttagatcactaaagtagtgatccaaacgctctcatattagt 86
||||||||||||| || |||||||||| ||| ||||||||| ||| ||||| ||||||||
Sbjct: 16 taaactaatataaaagcgtttagatcattaa-gtagtgatctaaatgctcttatattagt 74
Query: 87 ttacggagggagta 100
|||| |||||||||
Sbjct: 75 ttacagagggagta 88
Score = 73.8 bits (37), Expect = 4e-13
Identities = 77/89 (86%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 14 agtacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacg 73
|||||| |||||||||||||||||||||| ||||||||||| | || ||||| |||||
Sbjct: 90 agtactccctctgtaaactaatataagagcatttagatcact-acttaatgatctaaacg 32
Query: 74 ctctcatattagtttacggagggagtagt 102
|| | ||||||||||| | ||||||||||
Sbjct: 31 cttttatattagtttatgaagggagtagt 3
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| |||| |||||||||||||||| ||||||| ||| |||||||| || ||| |||
Sbjct: 5 tactccctccgtaaactaatataagaacatttagattactgaagtagtgttctaaatgct 64
Query: 76 ctcatattagtttacggagggagta 100
|| ||||||||||| ||||||||||
Sbjct: 65 cttatattagtttatggagggagta 89
Score = 52.0 bits (26), Expect = 2e-06
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 27 taaactaatataagagtgtttagatcactaaagtagtgatccaaacgctctcatattagt 86
|||||||||||||||| |||||| ||||| ||| ||| ||| | ||| ||||||||
Sbjct: 78 taaactaatataagagcatttagaacactacttcagtaatctaaatgttcttatattagt 19
Query: 87 ttacggagggagta 100
||||||||||||||
Sbjct: 18 ttacggagggagta 5
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 71.9 bits (36), Expect = 2e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 21 cctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgctctcat 80
|||| ||||||||||||||||| ||||||| ||||||||| ||||| ||| ||| | ||
Sbjct: 10 cctccgtaaactaatataagagcgtttagaatactaaagtaatgatctaaatgcttttat 69
Query: 81 attagtttacggagggagta 100
|||||||||| ||||||||
Sbjct: 70 attagtttacaaagggagta 89
Score = 65.9 bits (33), Expect = 1e-10
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 13 aagtacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaac 72
||||||| ||| ||||||||||||||| || ||||||||| || |||| || ||||
Sbjct: 92 aagtactccctttgtaaactaatataaaagcatttagatcattactttagtattctaaac 33
Query: 73 gctctcatattagtttacggaggga 97
||||| |||||||||||||||||||
Sbjct: 32 gctcttatattagtttacggaggga 8
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 71.9 bits (36), Expect = 2e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 41 agtgtttagatcactaaagtagtgatccaaacgctctcatattagtttacggagggagta 100
||||||||||||||||||||||||||| |||| |||| ||||| ||||| |||||||||
Sbjct: 28 agtgtttagatcactaaagtagtgatctaaacactcttatatttctttacagagggagta 87
Score = 60.0 bits (30), Expect = 7e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 15 gtacttcctctgtaaactaatataagagtgtttagatcacta 56
||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 88 gtactccctctgtaaagaaatataagagtgtttagatcacta 47
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 67.9 bits (34), Expect = 3e-11
Identities = 75/88 (85%), Gaps = 3/88 (3%)
Strand = Plus / Minus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcacta---aagtagtgatccaaac 72
|||| ||| |||||| ||||||||||| ||||||||||||| |||||||||| ||||
Sbjct: 92 tactccctatgtaaaataatataagagcgtttagatcactagagtagtagtgatctaaac 33
Query: 73 gctctcatattagtttacggagggagta 100
||||||||||| || || |||||||||
Sbjct: 32 gctctcatatttattcacagagggagta 5
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 67.9 bits (34), Expect = 3e-11
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 27 taaactaatataagagtgtttagatcactaaagtagtgatccaaacgctctcatattagt 86
|||||||||||||||| ||||||| | |||| |||||||| ||| ||| | ||||||||
Sbjct: 78 taaactaatataagagcatttagattattaaaatagtgatctaaatgcttttatattagt 19
Query: 87 ttacggagggagta 100
|||| |||||||||
Sbjct: 18 ttacagagggagta 5
Score = 65.9 bits (33), Expect = 1e-10
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaacgct 75
|||| ||||||||||||||||||| || |||||||||||| || | ||| ||| |||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttagatcactattttaataatctaaatgct 64
Query: 76 ctcatattagtttacggagggagta 100
|| ||||||||||| ||||||||||
Sbjct: 65 cttatattagtttatggagggagta 89
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 21 cctctgtaaactaatataagagtgtttagatcactaaagtagtga 65
|||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 10 cctctgtaaactaatataagagcatttagatcactaaaatagtga 54
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 13 aagtacttcctctgtaaactaatataagagtgttt 47
||||||| |||||||||||||||||||||| ||||
Sbjct: 99 aagtactccctctgtaaactaatataagagcgttt 65
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 63.9 bits (32), Expect = 4e-10
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 13 aagtacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaac 72
||||||| |||| ||||| |||||||||| ||||||| |||||||||||| ||| |||
Sbjct: 2 aagtactccctcggtaaagaaatataagagcgtttagagcactaaagtagttatctaaat 61
Query: 73 gctctcatattagtttacggagggagta 100
||||| ||||| |||| |||||||||
Sbjct: 62 gctcttatatttctttatagagggagta 89
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 63.9 bits (32), Expect = 4e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 33 aatataagagtgtttagatcactaaagtagtgatccaaacgctctcatattagtttacgg 92
||||||||| ||||||||||||||||||||| ||| ||| | ||| ||||| ||||| |
Sbjct: 22 aatataagaatgtttagatcactaaagtagttatctaaatgatcttatatttctttacag 81
Query: 93 agggagta 100
||||||||
Sbjct: 82 agggagta 89
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 58.0 bits (29), Expect = 3e-08
Identities = 73/88 (82%), Gaps = 6/88 (6%)
Strand = Plus / Minus
Query: 13 aagtacttcctctgtaaactaatataagagtgtttagatcactaaagtagtgatccaaac 72
||||||| |||||||||| |||||||||| ||||||||||||| ||||| ||||
Sbjct: 86 aagtactccctctgtaaagaaatataagagcgtttagatcacta------tgatctaaac 33
Query: 73 gctctcatattagtttacggagggagta 100
||||| ||||| ||||| |||||||||
Sbjct: 32 gctcttatatttctttacagagggagta 5
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 16 tacttcctctgtaaactaatataagagtgttt 47
|||| |||||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagtgttt 36
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 66 tccaaacgctctcatattagtttacggagggagta 100
||||||| |||| |||||||||||| |||||||||
Sbjct: 39 tccaaacactcttatattagtttacagagggagta 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 67 ccaaacgctctcatattagtttacggagggagta 100
|||| |||||| |||||||||||| |||||||||
Sbjct: 41 ccaaccgctcttatattagtttaccgagggagta 74
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 71 acgctctcatattagtttacggagggagtag 101
||||||| |||||||||||||||||||||||
Sbjct: 33 acgctcttatattagtttacggagggagtag 63
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tacttcctctgtaaactaatataagag 42
|||| ||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagag 31
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 16 tacttcctctgtaaactaatataagagtgtttagatcactaaagtagt 63
|||| |||||||||| ||||||||| ||||||||||||||| ||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttagatcactaaaatagt 52
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 atattagtttacggagggagta 100
||||||||||||||||||||||
Sbjct: 68 atattagtttacggagggagta 89
