miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcatttagaacact 45
|||||||||||||||||||||||||||| |||||||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaacact 50
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 ctcttatattagtttacggagggagta 70
|||||||||||||||||||||||||||
Sbjct: 63 ctcttatattagtttacggagggagta 89
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcatttagaacact 45
|||||||||| |||||||||||||||||||||||||||||
Sbjct: 89 tactccctccataaactaatataagagcatttagaacact 50
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcatttaga 40
|||||||||||||||||||||||||| ||||||||
Sbjct: 5 tactccctccgtaaactaatataagaacatttaga 39
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 45 tcttatattagtttacggagggagta 70
||||||||||||||||||||||||||
Sbjct: 30 tcttatattagtttacggagggagta 5
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 ctcttatattagtttacggagggagta 70
|||||||||||||||| ||||||||||
Sbjct: 63 ctcttatattagtttatggagggagta 89
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 71.9 bits (36), Expect = 1e-12
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcatttagaacact 45
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 87 tactccctccgtaaactaatataagagcatttagatcact 48
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 ctcttatattagtttacggagggagta 70
|||||||||||||||||||||||||||
Sbjct: 61 ctcttatattagtttacggagggagta 87
Score = 46.1 bits (23), Expect = 6e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 11 cctccgtaaactaatataagagcatttagaacact 45
|||| |||||||||||||| |||||||||| ||||
Sbjct: 9 cctctgtaaactaatataaaagcatttagatcact 43
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 69.9 bits (35), Expect = 4e-12
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcatttaga 40
|||||||||||||||||||||||||||||||||||
Sbjct: 134 tactccctccgtaaactaatataagagcatttaga 100
Score = 54.0 bits (27), Expect = 2e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataagagcatttag 39
|||||||||| |||||||||||||||||| |||||
Sbjct: 4 gtactccctctgtaaactaatataagagcgtttag 38
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 ctcttatattagtttacggagggagta 70
|||||||||||||||||||||||||||
Sbjct: 108 ctcttatattagtttacggagggagta 134
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 44 ctcttatattagtttacggagggagtact 72
||||||||||||||||| |||||||||||
Sbjct: 31 ctcttatattagtttacagagggagtact 3
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 5 gtactccctccgtaaactaatataagagcatttagaac 42
||||||||||||||||||||||||||||| ||||||||
Sbjct: 88 gtactccctccgtaaactaatataagagcgtttagaac 51
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 44 ctcttatattagtttacggagggagtact 72
|||||||||||||||||||||||||||||
Sbjct: 61 ctcttatattagtttacggagggagtact 89
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 40 aacactcttatattagtttacggagggagtact 72
|||||| |||||||||||||| |||||||||||
Sbjct: 35 aacacttttatattagtttacagagggagtact 3
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataa 29
|||||||||| ||||||||||||||
Sbjct: 4 gtactccctctgtaaactaatataa 28
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 65.9 bits (33), Expect = 6e-11
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 9 tccctccgtaaactaatataagagcatttagaacact 45
||||| |||||||||||||||||||||||||||||||
Sbjct: 86 tcccttcgtaaactaatataagagcatttagaacact 50
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 4 tgtactccctccgtaaactaatataagagcatttaga 40
||||||||||| ||||||||||||||||| |||||||
Sbjct: 3 tgtactccctctgtaaactaatataagagtatttaga 39
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 43 actcttatattagtttacggagggagtac 71
|||||||||||||||||| ||||||||||
Sbjct: 32 actcttatattagtttacagagggagtac 4
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 65.9 bits (33), Expect = 6e-11
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 5 gtactccctccgtaaactaatataagagcatttagaacact 45
|||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 89 gtactccctctgtaaactaatataagagcatttagatcact 49
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 44 ctcttatattagtttacggagggagtact 72
||||||||||||||||| |||||||||||
Sbjct: 62 ctcttatattagtttacagagggagtact 90
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 63.9 bits (32), Expect = 3e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcatttagaacact 45
||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcact 44
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcatttaga 40
|||||||||||||||||||||||||||| ||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttaga 55
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 ctcttatattagtttacggagggagta 70
|||||||||||||||||||||||||||
Sbjct: 63 ctcttatattagtttacggagggagta 89
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 44 ctcttatattagtttacggagggagta 70
||||||||||||||||| |||||||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 63.9 bits (32), Expect = 3e-10
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 5 gtactccctccgtaaactaatataagagcatttaga 40
||||||||||| ||||||||||||||||||||||||
Sbjct: 90 gtactccctccataaactaatataagagcatttaga 55
Score = 56.0 bits (28), Expect = 6e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcatttagaacact 45
||||||||| |||||||||||||| |||||||||| ||||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttagatcact 44
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 44 ctcttatattagtttacggagggagtac 71
|||||||||||||||| |||||||||||
Sbjct: 63 ctcttatattagtttatggagggagtac 90
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 63.9 bits (32), Expect = 3e-10
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcatttagaa 41
|||||||||||||||||||||||||||| |||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaa 54
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataagagcatttagaacact 45
|||||||||| |||||||||||||||||| |||||| ||||
Sbjct: 4 gtactccctctgtaaactaatataagagcgtttagatcact 44
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 ctcttatattagtttacggagggagta 70
|||||||||||||||||||||||||||
Sbjct: 63 ctcttatattagtttacggagggagta 89
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 44 ctcttatattagtttacggagggagtact 72
||||||||||||||||| |||||||||||
Sbjct: 31 ctcttatattagtttacagagggagtact 3
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 40 aacactcttatattagtttacggagggagta 70
|||||||||||||||||||||||||||||||
Sbjct: 35 aacactcttatattagtttacggagggagta 5
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcattta 38
||||||||| |||||||||||||||||||||||
Sbjct: 89 tactccctcggtaaactaatataagagcattta 57
Score = 56.0 bits (28), Expect = 6e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcatttagaacact 45
||||||||||||||||||||||||||| |||||| ||||
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagatcact 44
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 ctcttatattagtttacggagggagta 70
||||||||||||||||| |||||||||
Sbjct: 63 ctcttatattagtttaccgagggagta 89
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 40 aacactcttatattagtttacggagggagta 70
|||||||||||||||||||||||||||||||
Sbjct: 35 aacactcttatattagtttacggagggagta 5
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagag 32
|||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtaaactaatataagag 31
Score = 54.0 bits (27), Expect = 2e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 3 ttgtactccctccgtaaactaatataagagcatttagaacact 45
|||||||||||| |||||||||||||| | |||||||| ||||
Sbjct: 92 ttgtactccctctgtaaactaatataaaaacatttagatcact 50
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 47 ttatattagtttacggagggagtac 71
|||||||||||||| ||||||||||
Sbjct: 66 ttatattagtttacagagggagtac 90
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataagagcatttag 39
||||||||||||||||||||||||||||| |||||
Sbjct: 4 gtactccctccgtaaactaatataagagcgtttag 38
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 44 ctcttatattagtttacggagggagtact 72
|||||||||||||||||||||||||||||
Sbjct: 31 ctcttatattagtttacggagggagtact 3
Score = 56.0 bits (28), Expect = 6e-08
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcatttagaacact 45
|||| |||| ||||||||||||||||||||||||| ||||
Sbjct: 89 tacttcctctgtaaactaatataagagcatttagatcact 50
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 61.9 bits (31), Expect = 1e-09
Identities = 56/65 (86%), Gaps = 7/65 (10%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcatttagaacactcttatattagtttacggagg 65
||||||||| ||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagca-------cgctcttatattagtttacggagg 57
Query: 66 gagta 70
|||||
Sbjct: 58 gagta 62
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagc 33
||||||||||||||||||||||||||||
Sbjct: 62 tactccctccgtaaactaatataagagc 35
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%), Gaps = 5/71 (7%)
Strand = Plus / Minus
Query: 5 gtactccctccgtaaactaatataagagcatttag-----aacactcttatattagttta 59
|||||||||| |||||||||||||||||| || | ||||||||||||||||||||
Sbjct: 75 gtactccctcggtaaactaatataagagcggttgggtccaaacactcttatattagttta 16
Query: 60 cggagggagta 70
| |||||||||
Sbjct: 15 cagagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 44 ctcttatattagtttacggagggagtac 71
||||||||||||||||| ||||||||||
Sbjct: 48 ctcttatattagtttaccgagggagtac 75
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagag 32
||||||||| |||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagag 31
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 60.0 bits (30), Expect = 4e-09
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 5 gtactccctccgtaaactaatataagagcatttagaac 42
||||||||||||||||||||||||| ||| ||||||||
Sbjct: 88 gtactccctccgtaaactaatataatagcgtttagaac 51
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 40 aacactcttatattagtttacggagggagtact 72
||||||||||||||||||||| |||||||||||
Sbjct: 35 aacactcttatattagtttacagagggagtact 3
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 ttatattagtttacggagggagtact 72
||||||||||||||||||||||||||
Sbjct: 64 ttatattagtttacggagggagtact 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataagag 32
|||||||||| |||||||||||||||||
Sbjct: 4 gtactccctctgtaaactaatataagag 31
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 9 tccctccgtaaactaatataagagcatttagaa 41
||||||||||||||||||||||||| |||||||
Sbjct: 8 tccctccgtaaactaatataagagcgtttagaa 40
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 44 ctcttatattagtttacggaggga 67
||||||||||||||||||||||||
Sbjct: 31 ctcttatattagtttacggaggga 8
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 5 gtactccctccgtaaactaatataagagcatttaga 40
||||||||| |||||||||||||| ||||||||||
Sbjct: 90 gtactccctttgtaaactaatataaaagcatttaga 55
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataagagcatttagaa 41
||||||||||||||||||||||||| ||| |||||||
Sbjct: 4 gtactccctccgtaaactaatataaaagcgtttagaa 40
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 47 ttatattagtttacggagggagtac 71
|||||||||||||||||||||||||
Sbjct: 28 ttatattagtttacggagggagtac 4
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcatttagaacact 45
||||||||| |||||||||||||||| | |||||| ||||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcact 50
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 tcttatattagtttacggagggagta 70
|||||||||||||||| |||||||||
Sbjct: 64 tcttatattagtttacagagggagta 89
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 40 aacactcttatattagtttacggagggagtact 72
||||||||||||||||||||| |||||||||||
Sbjct: 35 aacactcttatattagtttacagagggagtact 3
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataagagcatttagaacact 45
|||||||||| ||||||||||||||||| |||||| ||||
Sbjct: 4 gtactccctctgtaaactaatataagagtgtttagatcact 44
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataagagcatttagaacact 45
|||||||||| |||||||||||||||||| |||||| ||||
Sbjct: 4 gtactccctctgtaaactaatataagagcttttagatcact 44
Score = 56.0 bits (28), Expect = 6e-08
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 5 gtactccctccgtaaactaatataagagcatttaga 40
||||||||||| ||||||||||||||||| ||||||
Sbjct: 97 gtactccctccttaaactaatataagagcgtttaga 62
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 44 ctcttatattagtttacggagggagtact 72
||||||||||||||||| |||||||||||
Sbjct: 31 ctcttatattagtttacagagggagtact 3
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 44 ctcttatattagtttacggagggagtac 71
|||||||||||||||| |||||||||||
Sbjct: 70 ctcttatattagtttaaggagggagtac 97
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 5 gtactccctccgtaaactaatataagagcatttagaacact 45
|||||||| | |||||||||||||| |||||||||||||||
Sbjct: 90 gtactccccctgtaaactaatataaaagcatttagaacact 50
Score = 54.0 bits (27), Expect = 2e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcatttaga 40
||||||||| |||||||||||||||||| ||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttaga 39
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 44 ctcttatattagtttacggagggagta 70
||||||||||||||||| |||||||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 56.0 bits (28), Expect = 6e-08
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 40 aacactcttatattagtttacggagggagtac 71
||||||||||||||| ||||||||||||||||
Sbjct: 35 aacactcttatattaatttacggagggagtac 4
Score = 54.0 bits (27), Expect = 2e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 7 actccctccgtaaactaatataagagcatttagaacact 45
|||||||| |||||||||||||||||| |||||| ||||
Sbjct: 88 actccctcagtaaactaatataagagcgtttagatcact 50
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataagag 32
|||||||||||||||| |||||||||||
Sbjct: 4 gtactccctccgtaaattaatataagag 31
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 44 ctcttatattagtttacggagggagt 69
||||||||||||||||| ||||||||
Sbjct: 63 ctcttatattagtttactgagggagt 88
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 56.0 bits (28), Expect = 6e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcatttagaacact 45
||||||||| ||||||||||||||||||||| ||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcact 44
Score = 56.0 bits (28), Expect = 6e-08
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcatttagaacact 45
||||||||||||||| |||||||||||||||||| ||||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcact 50
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 44 ctcttatattagtttacggagggagta 70
||||||||||||||||| |||||||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 56.0 bits (28), Expect = 6e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 10 ccctccgtaaactaatataagagcatttagaacact 45
||||| ||||||||||||||||||||||||| ||||
Sbjct: 9 ccctctgtaaactaatataagagcatttagatcact 44
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 5 gtactccctccgtaaactaatataagagc 33
|||||||||| ||||||||||||||||||
Sbjct: 97 gtactccctctgtaaactaatataagagc 69
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 44 ctcttatattagtttacggagggagtact 72
||||||||||||||||| |||||||||||
Sbjct: 70 ctcttatattagtttacagagggagtact 98
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 56.0 bits (28), Expect = 6e-08
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 2 attgtactccctccgtaaactaatataagagcatttagaacact 45
||||||||||||| |||||||||||||||| | |||||| ||||
Sbjct: 93 attgtactccctctgtaaactaatataagaccttttagatcact 50
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcttatattagtttacggagggagtac 71
|||||||||||||||| ||||||||||
Sbjct: 64 tcttatattagtttacagagggagtac 90
Score = 42.1 bits (21), Expect = 0.001
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 9 tccctccgtaaactaatataagagcatttagaacact 45
|||||| |||||||||||||||| | |||||| ||||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcact 44
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 56.0 bits (28), Expect = 6e-08
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 2 attgtactccctccgtaaactaatataagagcatttagaacact 45
||||||||||||| |||||||||||||||| | |||||| ||||
Sbjct: 95 attgtactccctctgtaaactaatataagaccttttagatcact 52
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcttatattagtttacggagggagtac 71
|||||||||||||||| ||||||||||
Sbjct: 66 tcttatattagtttacagagggagtac 92
Score = 42.1 bits (21), Expect = 0.001
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 9 tccctccgtaaactaatataagagcatttagaacact 45
|||||| |||||||||||||||| | |||||| ||||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcact 44
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 56.0 bits (28), Expect = 6e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcatttagaacact 45
||||||||| |||||||||||||||||| |||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcact 44
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 44 ctcttatattagtttacggagggagta 70
||||||||||||||||| |||||||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 54.0 bits (27), Expect = 2e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 4 tgtactccctccgtaaactaatataagagcattta 38
||||||||||| |||||||||||||| ||||||||
Sbjct: 3 tgtactccctctgtaaactaatataaaagcattta 37
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataa 29
||||||||||||||||||||||||
Sbjct: 89 tactccctccgtaaactaatataa 66
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 ttatattagtttacggagggagta 70
||||||||||||||||||||||||
Sbjct: 66 ttatattagtttacggagggagta 89
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 47 ttatattagtttacggagggagtac 71
|||||||||||||| ||||||||||
Sbjct: 28 ttatattagtttacagagggagtac 4
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 54.0 bits (27), Expect = 2e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 11 cctccgtaaactaatataagagcatttagaacact 45
||||||||||||||||||||||| |||||| ||||
Sbjct: 84 cctccgtaaactaatataagagcgtttagatcact 50
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 ctcttatattagtttacggagg 65
||||||||||||||||||||||
Sbjct: 63 ctcttatattagtttacggagg 84
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 54.0 bits (27), Expect = 2e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcatttaga 40
||||||||||||||| |||||||||||| ||||||
Sbjct: 5 tactccctccgtaaattaatataagagcgtttaga 39
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 44 ctcttatattagtttacggagggagta 70
||||||||||| |||||||||||||||
Sbjct: 31 ctcttatattaatttacggagggagta 5
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 7 actccctccgtaaactaatataagag 32
||||||||||||||||||||||||||
Sbjct: 88 actccctccgtaaactaatataagag 63
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 44 ctcttatattagtttacggagggagt 69
||||||||||||||||||||||||||
Sbjct: 63 ctcttatattagtttacggagggagt 88
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagc 33
||||||||| ||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagc 32
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagc 33
||||||||| ||||||||||||||||||
Sbjct: 89 tactccctctgtaaactaatataagagc 62
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 44 ctcttatattagtttacggagggagta 70
||||||||||||||||| |||||||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 ctcttatattagtttacggagggagta 70
||||||||||||||||| |||||||||
Sbjct: 63 ctcttatattagtttacagagggagta 89
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 40 aacactcttatattagtttacggagggagta 70
|||||||||||||| |||||||||||||||
Sbjct: 59 aacactcttatatttctttacggagggagta 89
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcatttag 39
||||||||||||||| ||||||||||| |||||
Sbjct: 5 tactccctccgtaaagaaatataagagcgtttag 38
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 42.1 bits (21), Expect = 0.001
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataagagcatttagaacact 45
|||||||||| ||||| ||||||||||| |||||| ||||
Sbjct: 4 gtactccctcggtaaagaaatataagagcgtttagagcact 44
Score = 42.1 bits (21), Expect = 0.001
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 4 tgtactccctccgtaaactaatataagagcatttaga 40
||||||||||| |||| ||||||||||||||||||
Sbjct: 91 tgtactccctctataaagaaatataagagcatttaga 55
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 42.1 bits (21), Expect = 0.001
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 5 gtactccctccgtaaactaatataagagcatttagaacact 45
|||||||||| ||||| ||||||||||| |||||| ||||
Sbjct: 84 gtactccctctgtaaagaaatataagagcgtttagatcact 44
